Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CYK58_RS07010 Genome accession   NZ_CP025474
Coordinates   1439893..1440360 (+) Length   155 a.a.
NCBI ID   WP_164543858.1    Uniprot ID   -
Organism   Helicobacter pylori strain H-137     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434893..1445360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK58_RS06990 (CYK58_06985) grpE 1435053..1435628 (+) 576 WP_126131488.1 nucleotide exchange factor GrpE -
  CYK58_RS06995 (CYK58_06990) dnaK 1435659..1437521 (+) 1863 WP_000521029.1 molecular chaperone DnaK -
  CYK58_RS07000 (CYK58_06995) - 1437778..1438695 (+) 918 WP_164543857.1 O-acetylserine-dependent cystathionine beta-synthase -
  CYK58_RS07005 (CYK58_07000) - 1438716..1439858 (+) 1143 WP_126131490.1 cystathionine gamma-synthase -
  CYK58_RS07010 (CYK58_07005) luxS 1439893..1440360 (+) 468 WP_164543858.1 S-ribosylhomocysteine lyase Regulator
  CYK58_RS07015 (CYK58_07010) - 1440565..1442250 (+) 1686 WP_339326521.1 5'-nucleotidase C-terminal domain-containing protein -
  CYK58_RS07020 (CYK58_07015) tlpB 1442457..1444154 (+) 1698 WP_126131492.1 methyl-accepting chemotaxis protein TlpB -
  CYK58_RS07025 (CYK58_07020) - 1444185..1444967 (+) 783 WP_126131493.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17663.13 Da        Isoelectric Point: 6.6934

>NTDB_id=219044 CYK58_RS07010 WP_164543858.1 1439893..1440360(+) (luxS) [Helicobacter pylori strain H-137]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIIKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLAHAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=219044 CYK58_RS07010 WP_164543858.1 1439893..1440360(+) (luxS) [Helicobacter pylori strain H-137]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTATCAAATACGATGTGCGCTTCAAGCAACCCAACAAAGATCACATGGATA
TGCCAAGCTTGCACTCTTTGGAGCATTTAGTCGCTGAGATTATCCGTAACCACGCTAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGCTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCTAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCACGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.429

90.323

0.374

Multiple sequence alignment