Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AOZ05_RS06920 Genome accession   NZ_CP019945
Coordinates   1311907..1312779 (+) Length   290 a.a.
NCBI ID   WP_000931872.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BA01611     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1306907..1317779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS06900 ylqF 1307743..1308627 (+) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -
  AOZ05_RS06905 - 1308611..1309378 (+) 768 WP_000176406.1 ribonuclease HII -
  AOZ05_RS06910 sucC 1309487..1310653 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  AOZ05_RS06915 sucD 1310675..1311583 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  AOZ05_RS06920 dprA 1311907..1312779 (+) 873 WP_000931872.1 DNA-processing protein DprA Machinery gene
  AOZ05_RS06925 topA 1312953..1315028 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  AOZ05_RS06930 trmFO 1315184..1316491 (+) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33212.51 Da        Isoelectric Point: 8.3112

>NTDB_id=219033 AOZ05_RS06920 WP_000931872.1 1311907..1312779(+) (dprA) [Staphylococcus aureus strain BA01611]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=219033 AOZ05_RS06920 WP_000931872.1 1311907..1312779(+) (dprA) [Staphylococcus aureus strain BA01611]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGTCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Lactococcus lactis subsp. cremoris KW2

38.214

96.552

0.369
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362

Multiple sequence alignment