Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   SPSF3K_RS07040 Genome accession   NZ_CP025420
Coordinates   1398991..1400295 (-) Length   434 a.a.
NCBI ID   WP_003108419.1    Uniprot ID   A0ABN0ISJ1
Organism   Streptococcus parauberis strain SPOF3K     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393991..1405295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS07010 (SPSF3K_01424) - 1394513..1394902 (-) 390 WP_003108421.1 cytidine deaminase -
  SPSF3K_RS07015 (SPSF3K_01425) deoC 1394889..1395551 (-) 663 WP_003103647.1 deoxyribose-phosphate aldolase -
  SPSF3K_RS07020 (SPSF3K_01426) - 1395565..1396842 (-) 1278 WP_003102832.1 pyrimidine-nucleoside phosphorylase -
  SPSF3K_RS07025 (SPSF3K_01427) - 1396829..1397428 (-) 600 WP_003103028.1 class I SAM-dependent methyltransferase -
  SPSF3K_RS07030 (SPSF3K_01428) coaA 1397679..1398599 (+) 921 WP_003108420.1 type I pantothenate kinase -
  SPSF3K_RS07035 (SPSF3K_01429) rpsT 1398668..1398901 (+) 234 WP_003105398.1 30S ribosomal protein S20 -
  SPSF3K_RS07040 (SPSF3K_01430) ciaH 1398991..1400295 (-) 1305 WP_003108419.1 sensor histidine kinase Regulator
  SPSF3K_RS07045 (SPSF3K_01431) ciaR 1400288..1400962 (-) 675 WP_003104260.1 response regulator transcription factor Regulator
  SPSF3K_RS07050 (SPSF3K_01432) - 1401083..1403620 (-) 2538 WP_037619666.1 M1 family metallopeptidase -
  SPSF3K_RS07055 (SPSF3K_01433) phoU 1403684..1404337 (-) 654 WP_003103398.1 phosphate signaling complex protein PhoU -
  SPSF3K_RS07060 (SPSF3K_01434) pstB 1404403..1405161 (-) 759 WP_003104047.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 49729.10 Da        Isoelectric Point: 9.1102

>NTDB_id=218977 SPSF3K_RS07040 WP_003108419.1 1398991..1400295(-) (ciaH) [Streptococcus parauberis strain SPOF3K]
MNKIKLFLKSGSFDHFFHFFTVFTSIFVIMTFIILQIMRFGVYSTVDNSLNLVAKHSTLYADKAMEQISLFNFDNQNFNE
ATSRYKSSLITDPVGNTDIILYSADGTILNPFDAFSNLNYFKLNPHQLNKIVTQKKTNFYGHEEKFHTVTIKVQSNNYPA
VSYLSAVANVDQLDRANERYENIIILVMSIFWLISIFASIYLAYWSRKPIVESFEKQKSFVENASHELRTPLAVLQNRLE
SLFRKPNETILENSEAIASSLEEVRNMRILTTNLLNLARRDDGIDVKKEEIGASFFEPIFENYKLIAEENGIKFQSFNEV
SYKFVTDKALLKQLITILFDNAVKYTAENGNIVILVKTTEKSLLLRVSDNGIGISNSDKERIFDRFYRVDKARTRQIGGF
GLGLALAKQIVVTLKGDITVKDNFPQGTIFQVKL

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=218977 SPSF3K_RS07040 WP_003108419.1 1398991..1400295(-) (ciaH) [Streptococcus parauberis strain SPOF3K]
ATGAATAAGATAAAATTATTTTTAAAGTCAGGGAGCTTTGATCATTTCTTTCATTTCTTCACTGTTTTTACAAGTATTTT
TGTTATTATGACTTTTATCATATTACAAATTATGCGCTTTGGTGTCTATTCAACAGTTGATAATAGTTTGAATCTTGTTG
CAAAACACTCTACTCTTTATGCTGATAAAGCGATGGAACAGATTTCACTCTTTAATTTTGATAATCAGAATTTTAATGAA
GCGACGAGTCGCTATAAGTCATCTTTGATTACTGATCCTGTTGGTAATACTGACATTATCTTATATAGTGCTGATGGAAC
AATTTTAAATCCCTTTGATGCTTTTTCAAACTTAAATTATTTTAAATTAAATCCACATCAACTTAATAAGATAGTTACCC
AAAAAAAAACAAATTTTTACGGACATGAAGAAAAGTTTCATACTGTCACCATTAAAGTTCAATCAAATAATTATCCTGCC
GTTTCTTATCTCAGTGCGGTGGCAAATGTTGACCAACTTGATCGGGCTAATGAGCGGTATGAGAATATTATTATATTGGT
TATGAGTATCTTTTGGTTAATTTCCATTTTTGCAAGTATCTATTTAGCTTATTGGAGTCGAAAACCTATTGTTGAGAGTT
TTGAAAAGCAGAAGTCATTTGTTGAAAATGCTAGTCATGAATTAAGGACGCCTTTGGCTGTGTTACAAAATCGCTTAGAA
TCTTTGTTTAGGAAGCCAAACGAGACTATCTTAGAGAATAGCGAAGCCATTGCTTCAAGTCTTGAAGAAGTAAGAAACAT
GCGTATTTTGACGACTAATCTCCTAAATTTAGCTAGACGAGATGATGGGATTGATGTAAAGAAAGAAGAAATTGGCGCTT
CATTCTTTGAGCCTATTTTTGAAAATTATAAGCTAATTGCGGAAGAAAATGGGATAAAATTTCAATCATTTAACGAAGTT
TCCTATAAATTTGTCACTGATAAAGCTTTGTTAAAACAATTAATAACCATCTTATTTGATAATGCTGTGAAATATACAGC
TGAAAATGGGAATATTGTAATCCTCGTTAAAACGACTGAGAAATCACTCTTACTTCGTGTTAGTGATAATGGCATAGGAA
TTTCTAATTCAGATAAAGAGAGAATTTTTGATCGCTTTTATCGGGTTGATAAAGCTAGGACGCGTCAAATTGGTGGATTC
GGTCTAGGCCTAGCATTAGCTAAACAGATTGTGGTCACTTTAAAAGGTGATATTACAGTCAAAGATAATTTTCCTCAAGG
AACAATTTTTCAGGTCAAATTATAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(327-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(218-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

56.161

97.235

0.546
  ciaH Streptococcus pneumoniae Rx1

50

100

0.505
  ciaH Streptococcus pneumoniae D39

50

100

0.505
  ciaH Streptococcus pneumoniae R6

50

100

0.505
  ciaH Streptococcus pneumoniae TIGR4

50

100

0.505

Multiple sequence alignment