Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CRH08_RS11465 Genome accession   NZ_CP025419
Coordinates   2228290..2229384 (+) Length   364 a.a.
NCBI ID   WP_002936177.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2223290..2234384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS11435 - 2223376..2224122 (-) 747 WP_013730689.1 Bro-N domain-containing protein -
  CRH08_RS11440 - 2224141..2224368 (-) 228 WP_112493955.1 helix-turn-helix transcriptional regulator -
  CRH08_RS11445 - 2224522..2225235 (+) 714 WP_013730691.1 helix-turn-helix transcriptional regulator -
  CRH08_RS11450 - 2225599..2226429 (+) 831 WP_013730692.1 KilA-N domain-containing protein -
  CRH08_RS11455 - 2226594..2227766 (+) 1173 WP_013730693.1 site-specific integrase -
  CRH08_RS11460 yaaA 2227904..2228287 (+) 384 WP_002936175.1 S4 domain-containing protein YaaA -
  CRH08_RS11465 recF 2228290..2229384 (+) 1095 WP_002936177.1 DNA replication/repair protein RecF Machinery gene
  CRH08_RS11470 - 2229824..2231026 (-) 1203 WP_009909264.1 IS110-like element ISSsu7 family transposase -
  CRH08_RS11475 guaB 2231277..2232758 (-) 1482 WP_014637236.1 IMP dehydrogenase -
  CRH08_RS11480 trpS 2232990..2234015 (-) 1026 WP_013730696.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42217.34 Da        Isoelectric Point: 7.2235

>NTDB_id=218901 CRH08_RS11465 WP_002936177.1 2228290..2229384(+) (recF) [Streptococcus suis strain SH0104]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=218901 CRH08_RS11465 WP_002936177.1 2228290..2229384(+) (recF) [Streptococcus suis strain SH0104]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment