Detailed information NTG0218843

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: B2B18_RS16495
• Genome accession: NZ_CP019930
• Coordinates: 3594241..3595662 (-)
• Length: 473 a.a.
• NCBI ID: WP_012418986.1
• Uniprot ID: Q2KTQ1
• Organism: Bordetella avium strain Ba002
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3589241..3600662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B2B18_RS16470	-	3589863..3590492 (+)	630	WP_012418981.1	LysE family transporter	-
B2B18_RS16475	-	3590518..3592125 (+)	1608	WP_012418982.1	peptide chain release factor 3	-
B2B18_RS16480	-	3592162..3592827 (+)	666	WP_012418983.1	hypothetical protein	-
B2B18_RS16485	bfr	3592900..3593376 (-)	477	WP_012418984.1	bacterioferritin	-
B2B18_RS16490	-	3593884..3594180 (+)	297	WP_012418985.1	(2Fe-2S)-binding protein	-
B2B18_RS16495	rpoN/rpoN1	3594241..3595662 (-)	1422	WP_012418986.1	RNA polymerase factor sigma-54	Machinery gene
B2B18_RS16500	-	3595661..3596296 (+)	636	WP_012418987.1	hypothetical protein	-
B2B18_RS16505	leuA	3596653..3598362 (+)	1710	WP_012418988.1	2-isopropylmalate synthase	-
B2B18_RS16510	-	3598442..3599731 (-)	1290	WP_012418989.1	amidase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 52235.68 Da
• Isoelectric Point: 4.8623

>NTDB_id=218843 B2B18_RS16495 WP_012418986.1 3594241..3595662(-) (rpoN/rpoN1) [Bordetella avium strain Ba002]
MQNIVPMTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAEISQALADNPLLERDENPAEQVDSQREASIESDDSSPE
IETRLEEMPGSGGVYPDEDEPQQARADTLREHLLGQLALTRAGPRDAALVEVLIEELDDNGYLGSPLVEILQWLPPELEI
DEDELRVALSLLQSFDPPGIGARDMADCLLLQLRQPDLTRLPEAANPVILRCAREICVQHLSLLASGNLARLRDVLGVDE
PTLRAAHSLIVRLEPRPGRAWTVPAAEYALPDVLVRKTRQGWQAVLNSAAMPRLQINGLYAQMLANQRETAYAGLSAQLQ
QARWMIRNIEQRFDTILRVSQAIVVHQAAFFSEGPAAMRPLILKDIAAELGLHESTISRATTQKYMLTPFGTLELKYFFG
TGLATDSGNAASATAVQAHIRKMVSEENRAKPLSDSQIMERLASQGIVIARRTVAKYREALRIAPAAVRKAQG

Nucleotide

• Length: 1422 bp

>NTDB_id=218843 B2B18_RS16495 WP_012418986.1 3594241..3595662(-) (rpoN/rpoN1) [Bordetella avium strain Ba002]
ATGCAAAATATTGTACCTATGACTCGTCCTGCTCTAGAACTTCGGCCTGGTCAGCATTTAACTTTGACCCCGCAACTGCA
ACAGTCGATCCGGCTCTTGCAGCTATCCTCATTGGAGCTGGAGGCGGAAATCTCCCAGGCCTTGGCCGACAATCCGTTGC
TGGAGCGCGACGAAAATCCGGCCGAACAGGTGGACTCGCAGCGCGAGGCAAGCATCGAAAGTGATGATTCCTCACCTGAA
ATCGAGACGCGTCTGGAAGAAATGCCGGGTTCGGGCGGCGTCTATCCAGACGAAGATGAGCCGCAACAGGCCCGCGCCGA
CACGCTGCGTGAGCATTTGCTGGGCCAACTGGCGCTGACCCGCGCCGGGCCGCGCGACGCGGCATTGGTTGAGGTGCTCA
TCGAGGAGCTGGACGACAACGGCTATCTGGGCTCGCCGCTGGTGGAAATCTTGCAGTGGCTGCCGCCGGAGCTGGAGATC
GATGAAGACGAGTTGCGTGTCGCCTTGAGCCTGTTGCAGTCTTTCGACCCGCCGGGCATCGGCGCCCGCGATATGGCGGA
CTGTCTGTTGCTGCAATTGCGCCAACCCGATCTGACTCGTTTGCCCGAAGCCGCCAACCCTGTCATCTTGCGTTGTGCGC
GCGAGATCTGCGTGCAGCATCTGTCCTTGCTGGCCTCAGGCAATTTGGCGCGCCTGCGTGACGTGCTGGGGGTGGACGAA
CCGACCTTGCGCGCCGCCCACAGCCTTATCGTGCGCCTAGAGCCCCGACCCGGTCGGGCCTGGACCGTCCCGGCGGCCGA
GTATGCGCTGCCTGACGTGCTGGTGCGCAAAACGCGGCAGGGCTGGCAGGCCGTGCTCAATAGCGCCGCCATGCCCCGGC
TACAGATCAATGGGTTGTATGCGCAAATGTTGGCTAACCAGCGAGAAACGGCCTATGCGGGCCTGAGCGCACAGTTGCAG
CAGGCACGCTGGATGATCCGCAATATCGAACAACGATTCGACACGATTCTGCGCGTGTCGCAGGCCATTGTGGTGCATCA
GGCGGCGTTTTTCAGTGAAGGTCCGGCTGCCATGCGTCCGCTCATTCTCAAAGACATTGCAGCTGAGTTGGGTTTGCACG
AATCCACGATTTCACGCGCCACAACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAGCTCAAATATTTCTTCGGG
ACCGGTCTTGCCACGGATAGCGGGAATGCGGCTTCTGCCACCGCTGTGCAGGCGCATATCCGCAAGATGGTGTCAGAGGA
AAACCGCGCCAAGCCGCTATCTGATAGCCAGATCATGGAGCGATTGGCCAGTCAGGGCATCGTGATTGCCCGGCGTACCG
TGGCCAAGTACCGGGAAGCCTTGCGCATTGCGCCGGCGGCAGTGCGTAAGGCGCAGGGCTGA

Domains

Predicted by InterproScan.

• Sigma-54, DNA binding domain (Sigma54_DBD) (315-470)

• Sigma-54 factor, core binding domain (Sigma54_CBD) (101-300)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (12-55)

3D structure

• AlphaFold DB: Q2KTQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	49.507	100	0.531