Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CXR04_RS28775 Genome accession   NZ_CP025407
Coordinates   6613962..6616094 (+) Length   710 a.a.
NCBI ID   WP_101425147.1    Uniprot ID   -
Organism   Streptomyces sp. CMB-StM0423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6608962..6621094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR04_RS28745 (CXR04_28745) - 6609166..6609639 (-) 474 WP_101425141.1 hypothetical protein -
  CXR04_RS28750 (CXR04_28750) - 6609771..6610337 (+) 567 WP_101425142.1 HAD domain-containing protein -
  CXR04_RS28755 (CXR04_28755) - 6610376..6610918 (-) 543 WP_101425143.1 DUF1697 domain-containing protein -
  CXR04_RS28760 (CXR04_28760) - 6610995..6611522 (-) 528 WP_101425144.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  CXR04_RS28765 (CXR04_28765) - 6611761..6612603 (+) 843 WP_101425145.1 MHYT domain-containing protein -
  CXR04_RS28770 (CXR04_28770) - 6612736..6613662 (-) 927 WP_101425146.1 glycerophosphodiester phosphodiesterase family protein -
  CXR04_RS28775 (CXR04_28775) uvrB 6613962..6616094 (+) 2133 WP_101425147.1 excinuclease ABC subunit UvrB Machinery gene
  CXR04_RS28780 (CXR04_28780) - 6616288..6616866 (+) 579 WP_101425148.1 TerD family protein -
  CXR04_RS28785 (CXR04_28785) - 6616939..6619002 (+) 2064 WP_101425149.1 TerD family protein -
  CXR04_RS28790 (CXR04_28790) - 6619233..6620240 (+) 1008 WP_101425150.1 TerC family protein -
  CXR04_RS28795 (CXR04_28795) - 6620351..6621007 (-) 657 WP_101425151.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 79617.00 Da        Isoelectric Point: 4.6256

>NTDB_id=218792 CXR04_RS28775 WP_101425147.1 6613962..6616094(+) (uvrB) [Streptomyces sp. CMB-StM0423]
MRPVTDIERTMAPFEVVSSYQPNGDQPAAIDELERRITAGERDVVLLGATGTGKSATTAWMVERLQRPTLVLAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTP
QEYVDRMVPLKVGEETDRDQLLRRFVDIQYTRNDQAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVMSEDDGLYVFPASHYIAGPERMAKAVAGIETELDTQLGTLEKQGKLLEAQRLRMRTTYDLEMLQQIGTCSGVENYSLH
MDGRETGSPPHTLLDYFPEDFLLVIDESHVTVPQVGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFVERIGQTVYL
SATPGPYELSRGDGVVEQIIRPTGLVDPQVVVKPTEGQIDDLVHEIRTRAEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGEVHMY
ADKITPGMEKAIDETNRRRARQIAYNEEHGIDPQPLRKKINDIVAQIAREEVDTEALLGSGYRSTKPDAAAKAPVPELRQ
KTKPARRGEAEAGAAPTETPAADLAAQIEDMTARMRSAAADLQFEVAARLRDEVAEMKKELRQMKEAGLS

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=218792 CXR04_RS28775 WP_101425147.1 6613962..6616094(+) (uvrB) [Streptomyces sp. CMB-StM0423]
ATGCGGCCCGTCACAGACATCGAACGCACCATGGCGCCCTTCGAGGTAGTCAGCTCATATCAGCCGAACGGCGACCAGCC
CGCCGCCATCGACGAGCTCGAACGGCGGATCACGGCGGGCGAGCGGGACGTCGTGCTGCTCGGCGCCACCGGCACGGGCA
AGTCGGCCACGACGGCCTGGATGGTCGAGCGCCTGCAGCGCCCCACGCTGGTCCTCGCGCCCAACAAGACGCTGGCCGCC
CAGTTGGCGAACGAGTTCCGCGAGCTCCTGCCGAACAACGCGGTGGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCCCAGACGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACGAACTCGCTGCTCACCCGGCGCGACGTCATCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACGCCG
CAGGAGTACGTCGACCGGATGGTGCCGCTGAAGGTGGGCGAGGAGACCGACCGGGACCAGTTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACCAGGCGTTCACGCGCGGCACGTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAACTGGCCGTCCGCATCGAGATGTTCGGGGACGAGATCGAGGCCCTGTCCACGCTCCACCCGCTGACCGGC
GAGGTCATGAGCGAGGACGACGGGCTTTACGTCTTCCCGGCCTCGCACTACATCGCGGGACCCGAGCGCATGGCCAAGGC
CGTCGCCGGCATCGAGACCGAGCTGGACACGCAGCTCGGGACCCTGGAGAAGCAGGGCAAGCTGCTGGAGGCGCAGCGGC
TGCGCATGCGGACGACGTACGACCTGGAGATGCTCCAGCAGATCGGCACCTGCTCAGGCGTCGAGAACTACTCGCTGCAC
ATGGACGGCCGCGAGACCGGCTCCCCGCCGCACACCCTGCTGGACTACTTCCCGGAGGACTTCCTCCTCGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGGTCGGCGCCATGTACGAGGGCGACGCCTCGCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCGTCCGCGCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCGTGGAGCGCATCGGCCAGACGGTCTACCTC
TCCGCCACCCCCGGGCCGTACGAGCTGTCCCGCGGCGACGGCGTCGTGGAGCAGATCATCCGGCCCACCGGGCTCGTCGA
CCCCCAGGTCGTCGTCAAGCCGACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACGCGCGCGGAGAAGGACG
AGCGCGTCCTCGTCACCACGCTGACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTG
CGTTATCTGCACAGCGACGTCGACACGCTGCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCGCCGGGGAGTACGACGTGCT
GGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACCTGCCCGAGGTCTCCCTCGTCGCCATCCTCGACGCCGACAAGGAGG
GCTTCCTCCGCTCCGGCACGTCGCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCGGGCGAGGTGCACATGTAC
GCGGACAAGATCACGCCGGGCATGGAGAAGGCGATCGACGAGACCAACCGGCGCCGCGCCAGGCAGATCGCGTACAACGA
GGAACACGGGATCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGAGGTCGACA
CCGAGGCGTTGCTCGGCTCGGGCTACCGGTCCACGAAGCCCGACGCCGCGGCGAAGGCGCCGGTGCCCGAGCTGCGGCAG
AAGACGAAGCCCGCCCGCCGCGGCGAGGCCGAGGCCGGTGCGGCGCCCACGGAGACGCCCGCCGCCGATCTCGCCGCGCA
GATCGAGGACATGACCGCCCGGATGCGGTCCGCCGCCGCGGACCTCCAGTTCGAGGTGGCGGCCCGGCTGCGCGACGAGG
TGGCGGAGATGAAGAAGGAGCTCCGGCAGATGAAGGAGGCCGGGCTGTCGTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(667-699)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

58.533

94.085

0.551
  uvrB Streptococcus pneumoniae R6

58.533

94.085

0.551
  uvrB Streptococcus pneumoniae D39

58.533

94.085

0.551