Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   B2G52_RS05480 Genome accession   NZ_CP019894
Coordinates   987107..987913 (-) Length   268 a.a.
NCBI ID   WP_003713785.1    Uniprot ID   A0AAU8VER9
Organism   Neisseria lactamica strain Y92-1009     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 982107..992913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS05465 (B2G52_05465) - 982800..983360 (+) 561 WP_230455331.1 uracil-DNA glycosylase family protein -
  B2G52_RS05470 (B2G52_05470) trpB 983442..984644 (+) 1203 WP_003713791.1 tryptophan synthase subunit beta -
  B2G52_RS05475 (B2G52_05475) comA 984776..987037 (+) 2262 WP_155114581.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B2G52_RS05480 (B2G52_05480) comL 987107..987913 (-) 807 WP_003713785.1 outer membrane protein assembly factor BamD Machinery gene
  B2G52_RS05485 (B2G52_05485) rluD 987912..989036 (+) 1125 WP_003713784.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B2G52_RS05490 (B2G52_05490) - 989189..990136 (-) 948 WP_003713782.1 bile acid:sodium symporter family protein -
  B2G52_RS05500 (B2G52_05500) pgeF 990594..991373 (+) 780 WP_003713780.1 peptidoglycan editing factor PgeF -
  B2G52_RS05505 (B2G52_05505) lptE 991425..991904 (+) 480 WP_003713778.1 LPS assembly lipoprotein LptE -
  B2G52_RS05510 (B2G52_05510) holA 991906..992904 (+) 999 WP_003713777.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30634.74 Da        Isoelectric Point: 8.6962

>NTDB_id=218730 B2G52_RS05480 WP_003713785.1 987107..987913(-) (comL) [Neisseria lactamica strain Y92-1009]
MKKILLMVSLSLALCACASSQGTVDKDTQTTQGWGVEKLYAEAQDELGGGNYTRAVKLYEILGSRFPTGRYAQQALLDTA
YAYYKDDEKDKALAAIDRFRNLYPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVRRFPD
SKYAADASARMIKLVDALGGNEMSVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRR
VLETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 807 bp        

>NTDB_id=218730 B2G52_RS05480 WP_003713785.1 987107..987913(-) (comL) [Neisseria lactamica strain Y92-1009]
ATGAAAAAAATTCTTTTAATGGTTTCGTTAAGTTTGGCGTTGTGCGCCTGTGCAAGCAGCCAAGGCACGGTCGACAAAGA
CACCCAAACGACCCAAGGCTGGGGCGTGGAAAAACTCTATGCCGAAGCGCAAGACGAGTTGGGCGGCGGCAATTATACGC
GCGCCGTCAAATTATACGAAATATTGGGCTCGCGCTTCCCGACCGGCCGCTACGCGCAACAGGCGTTGCTGGATACGGCC
TACGCCTATTATAAAGACGACGAAAAAGACAAGGCGCTGGCGGCAATCGACCGCTTCCGCAACCTCTACCCGCAGCATCC
GAATATGGATTACGCGCTGTACCTGCGCGGTTTGGTACTGTTCAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGC
AAGACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTATCAGGCCTTTGCGGAACTCGTCCGGCGTTTCCCCGAC
AGCAAATACGCCGCCGATGCGTCCGCGCGTATGATCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTTGCCCG
TTATTATATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGCT
ATGTCGAAGAATCGCTCGCCATCTTGGAACTCGCCTACCAAAAACTCGGCAAACCGCAGCTTGCCGCCGACACGCGCCGC
GTGTTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTG
GCATTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(37-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

89.179

100

0.892
  comL Neisseria meningitidis MC58

88.433

100

0.884

Multiple sequence alignment