Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B2G52_RS05475 Genome accession   NZ_CP019894
Coordinates   984776..987037 (+) Length   753 a.a.
NCBI ID   WP_155114581.1    Uniprot ID   -
Organism   Neisseria lactamica strain Y92-1009     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 979776..992037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B2G52_RS05445 (B2G52_05445) - 980509..980964 (-) 456 WP_003713800.1 hypothetical protein -
  B2G52_RS05450 (B2G52_05450) - 981075..981644 (-) 570 WP_003713797.1 GTP pyrophosphokinase -
  B2G52_RS05455 (B2G52_05455) rsmA 981660..982439 (-) 780 WP_003713795.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  B2G52_RS05465 (B2G52_05465) - 982800..983360 (+) 561 WP_230455331.1 uracil-DNA glycosylase family protein -
  B2G52_RS05470 (B2G52_05470) trpB 983442..984644 (+) 1203 WP_003713791.1 tryptophan synthase subunit beta -
  B2G52_RS05475 (B2G52_05475) comA 984776..987037 (+) 2262 WP_155114581.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B2G52_RS05480 (B2G52_05480) comL 987107..987913 (-) 807 WP_003713785.1 outer membrane protein assembly factor BamD Machinery gene
  B2G52_RS05485 (B2G52_05485) rluD 987912..989036 (+) 1125 WP_003713784.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  B2G52_RS05490 (B2G52_05490) - 989189..990136 (-) 948 WP_003713782.1 bile acid:sodium symporter family protein -
  B2G52_RS05500 (B2G52_05500) pgeF 990594..991373 (+) 780 WP_003713780.1 peptidoglycan editing factor PgeF -
  B2G52_RS05505 (B2G52_05505) lptE 991425..991904 (+) 480 WP_003713778.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 81575.60 Da        Isoelectric Point: 10.1449

>NTDB_id=218729 B2G52_RS05475 WP_155114581.1 984776..987037(+) (comA) [Neisseria lactamica strain Y92-1009]
MFRRCFLPCWVVGVAASFALPVVPHWLFWLAAFAVFAVFARRFAFAGLMLCVLAGAAYGVFRTEAALSSQWRAEAVSGVP
LTVEVADMPRSDGRRVQFAAKAEDDGGRTFDLLLSDYKRREWAVGSRWRITARVHPVVGELNLRGLNREAWALSNGIGGA
GTVGADRVLLDDGSGWGIAVWRSRISRNWRQADADGGLSDGIGLMRALSVGEQSALRPELWQAFRPLGLTHLVSISGLHV
TMVAVMFAWLAKRLLACSPRLPTRPRVWVLAAGCAGALFYALLAGFSVPTQRSVLMLAAFAWAWRRGRLPAWATWWQALA
AVLLFDPSAVLGVGTWLSFGLVAALIWACSGRLHEGKQQTALRGQWAASVLSLVLLGYLFASLPLVSPLVNAVAIPWFSW
VLTPLALLGSVVPFAPLQQLGAFLAEYTLRFLVWLADVSPEFAVASAPLPLLVLAVCAALLLLLPRGLGLRPWAVLLLPR
GLGLRPWAVLLLAGFVFYRPPGVPENEAAVTVWDAGQGLSVSVQTANHHLLFDTGTASAAQTGIVPSLNAAGVRRLDKLV
LSHHDSDHDGGFQAVGKIPNGGIYAGQPEFYEGARHCAEQRWQWDGVDFEFLRPSERKNIDDNGKSCVLRVVAGGAALLV
TGDLDTKGEAELVKKYGSNLYSQVLVLGHHGSNTSSSGVFLNTVSPEYAVASSGYANAYKHPTQVVQNRVRAHGIKLLRT
DLSGALQFGLGRGGVKAQRLRGYKFYWQKKPFE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=218729 B2G52_RS05475 WP_155114581.1 984776..987037(+) (comA) [Neisseria lactamica strain Y92-1009]
GTGTTCCGTCGTTGTTTTTTGCCGTGTTGGGTCGTCGGCGTGGCGGCTTCGTTTGCGCTGCCGGTCGTGCCGCATTGGCT
GTTTTGGCTGGCGGCTTTTGCGGTTTTTGCTGTGTTTGCAAGGCGTTTTGCGTTTGCCGGTCTGATGCTGTGCGTGTTGG
CGGGCGCGGCTTACGGCGTATTCAGAACGGAAGCGGCACTGTCTTCGCAATGGCGGGCGGAGGCGGTTTCAGGCGTGCCG
TTGACGGTGGAAGTGGCGGATATGCCGAGGTCGGACGGGCGGCGCGTGCAGTTTGCTGCAAAGGCGGAGGATGACGGTGG
TCGGACGTTTGATTTGCTGCTGTCGGACTACAAACGGCGCGAATGGGCGGTCGGGAGCAGATGGCGGATAACGGCACGTG
TGCACCCCGTCGTCGGGGAGTTGAACCTGCGCGGTTTGAACCGTGAGGCGTGGGCATTATCCAACGGGATAGGCGGTGCG
GGGACGGTCGGTGCGGACAGGGTTTTGCTGGATGACGGAAGCGGTTGGGGGATTGCGGTTTGGCGCAGCCGCATCAGCCG
TAATTGGCGGCAGGCGGATGCGGACGGCGGGCTTTCAGACGGCATCGGGCTGATGCGCGCGTTGAGTGTGGGCGAACAGT
CGGCATTGCGCCCCGAATTGTGGCAGGCGTTCCGACCGTTGGGGCTGACGCATCTGGTCAGTATTTCGGGTTTGCACGTT
ACGATGGTGGCGGTGATGTTTGCGTGGCTGGCGAAGCGGCTGCTTGCCTGTTCCCCGCGCCTTCCCACCCGGCCGCGCGT
GTGGGTTTTGGCGGCGGGGTGTGCAGGCGCGCTGTTTTACGCGCTGCTTGCCGGTTTTTCCGTGCCGACGCAGCGCAGTG
TTTTGATGTTGGCGGCGTTTGCGTGGGCGTGGCGCAGGGGAAGGCTGCCGGCGTGGGCGACGTGGTGGCAGGCGTTGGCG
GCGGTGCTGCTGTTCGACCCGTCGGCAGTTTTGGGTGTGGGAACTTGGCTGTCTTTCGGTTTGGTGGCGGCCCTGATATG
GGCGTGTTCGGGGCGTTTGCACGAGGGGAAACAGCAAACCGCTTTGCGCGGACAGTGGGCGGCTTCGGTGTTGTCGTTGG
TTTTGCTCGGTTATCTGTTTGCTTCGCTGCCTTTGGTCAGCCCTTTGGTCAATGCGGTGGCGATTCCGTGGTTTTCTTGG
GTATTGACGCCGCTGGCGTTGCTGGGTTCGGTCGTGCCGTTTGCGCCTTTGCAACAGTTGGGGGCATTTTTGGCGGAATA
CACTTTGCGGTTTTTGGTGTGGCTTGCCGATGTGTCGCCCGAGTTTGCCGTTGCTTCCGCACCTTTGCCGCTGTTGGTGT
TGGCGGTGTGTGCCGCTTTGCTGTTGCTGTTGCCGCGCGGCTTGGGTTTGCGTCCGTGGGCGGTGTTGCTGTTGCCGCGC
GGCTTGGGTTTGCGTCCGTGGGCGGTGTTGCTGTTGGCAGGGTTTGTGTTTTACCGTCCGCCCGGCGTGCCGGAAAATGA
GGCTGCGGTTACGGTTTGGGATGCGGGGCAGGGTTTGTCGGTGTCGGTTCAGACGGCAAATCATCATCTTTTGTTTGACA
CCGGAACTGCATCGGCGGCACAGACGGGGATTGTGCCGAGTTTGAATGCGGCGGGTGTCCGCCGTTTGGACAAGCTGGTT
TTGTCGCATCACGACAGCGACCACGACGGCGGTTTTCAGGCAGTCGGCAAGATACCGAACGGCGGGATTTATGCCGGGCA
GCCGGAATTTTATGAGGGGGCGCGGCATTGTGCGGAACAGCGTTGGCAATGGGACGGCGTAGATTTCGAGTTTTTGAGGC
CGTCTGAACGCAAAAACATCGATGATAATGGGAAAAGTTGTGTTTTGCGTGTTGTGGCTGGCGGTGCGGCTTTGCTGGTA
ACCGGCGATTTGGATACGAAAGGCGAGGCGGAGTTGGTTAAAAAATACGGCTCAAACCTGTACAGCCAGGTTTTGGTTTT
GGGGCATCACGGCAGCAATACGTCCTCGTCGGGCGTGTTCCTCAATACCGTCTCGCCCGAATATGCCGTTGCTTCAAGCG
GTTATGCCAACGCCTACAAACATCCGACCCAAGTGGTGCAAAACCGTGTCCGCGCACACGGCATCAAACTGCTGCGTACC
GATTTGTCGGGCGCGCTGCAATTCGGCTTGGGACGCGGCGGCGTGAAGGCCCAACGTTTGAGAGGGTATAAATTCTATTG
GCAGAAAAAACCGTTTGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(7-167)

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(515-690)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

92.297

100

0.923

Multiple sequence alignment