Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF29688_RS07290 | Genome accession | NZ_CP019858 |
| Coordinates | 1444700..1445746 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 29688 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1410939..1490403 | 1444700..1445746 | within | 0 |
Gene organization within MGE regions
Location: 1410939..1490403
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF29688_RS07135 (CDIF29688_01393) | ytfJ | 1411085..1411513 (+) | 429 | WP_003419458.1 | GerW family sporulation protein | - |
| CDIF29688_RS07140 (CDIF29688_01394) | - | 1411761..1412201 (+) | 441 | WP_003419459.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29688_RS07145 (CDIF29688_01395) | - | 1412217..1413668 (+) | 1452 | WP_009902401.1 | leucyl aminopeptidase | - |
| CDIF29688_RS07150 (CDIF29688_01396) | - | 1413759..1414427 (-) | 669 | WP_003438292.1 | YwaF family protein | - |
| CDIF29688_RS07155 (CDIF29688_01397) | - | 1414696..1414836 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| CDIF29688_RS07160 (CDIF29688_01398) | - | 1415011..1415331 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDIF29688_RS07165 (CDIF29688_01399) | - | 1415451..1416188 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| CDIF29688_RS07170 (CDIF29688_01400) | acd | 1416403..1418226 (+) | 1824 | WP_021390133.1 | N-acetylglucosaminidase | - |
| CDIF29688_RS07175 (CDIF29688_01401) | - | 1418441..1422739 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| CDIF29688_RS07180 (CDIF29688_01402) | rimP | 1422943..1423404 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF29688_RS07185 (CDIF29688_01403) | nusA | 1423434..1424588 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF29688_RS07190 (CDIF29688_01404) | rnpM | 1424595..1424876 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF29688_RS07195 (CDIF29688_01405) | - | 1424866..1425177 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF29688_RS07200 (CDIF29688_01406) | infB | 1425199..1427139 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF29688_RS07205 (CDIF29688_01407) | rbfA | 1427182..1427562 (+) | 381 | WP_021366509.1 | 30S ribosome-binding factor RbfA | - |
| CDIF29688_RS07210 (CDIF29688_01408) | - | 1427543..1428526 (+) | 984 | WP_095890975.1 | DHH family phosphoesterase | - |
| CDIF29688_RS07215 (CDIF29688_01409) | truB | 1428539..1429444 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF29688_RS07220 (CDIF29688_01410) | - | 1429575..1430504 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF29688_RS07230 (CDIF29688_01411) | rpsO | 1430608..1430865 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF29688_RS07235 (CDIF29688_01412) | - | 1431105..1431950 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF29688_RS07240 (CDIF29688_01413) | pnp | 1432075..1434186 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF29688_RS07245 (CDIF29688_01414) | - | 1434452..1435195 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF29688_RS07250 (CDIF29688_01415) | - | 1435353..1436600 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| CDIF29688_RS07255 (CDIF29688_01416) | - | 1436635..1436880 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF29688_RS07260 (CDIF29688_01417) | dapG | 1436890..1438113 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF29688_RS07265 (CDIF29688_01418) | - | 1438226..1438960 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF29688_RS07270 (CDIF29688_01419) | - | 1439083..1441494 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF29688_RS07275 (CDIF29688_01420) | mnmH | 1441497..1442555 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF29688_RS07280 (CDIF29688_01421) | rimO | 1442549..1443883 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF29688_RS07285 (CDIF29688_01422) | pgsA | 1443870..1444412 (+) | 543 | WP_021370268.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF29688_RS07290 (CDIF29688_01423) | recA | 1444700..1445746 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF29688_RS07295 (CDIF29688_01424) | rny | 1445922..1447463 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF29688_RS07300 (CDIF29688_01425) | - | 1448098..1449879 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF29688_RS07305 (CDIF29688_01426) | lepB | 1449961..1450491 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDIF29688_RS07310 (CDIF29688_01427) | - | 1450531..1451355 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF29688_RS07315 (CDIF29688_01428) | - | 1451612..1452520 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF29688_RS07320 (CDIF29688_01429) | purB | 1452664..1454109 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CDIF29688_RS07325 (CDIF29688_01430) | - | 1454420..1454872 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF29688_RS07330 (CDIF29688_01431) | - | 1455207..1456403 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF29688_RS07335 (CDIF29688_01432) | galT | 1456788..1457738 (+) | 951 | WP_003438360.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF29688_RS07340 (CDIF29688_01433) | - | 1457899..1458651 (+) | 753 | WP_021366433.1 | exodeoxyribonuclease III | - |
| CDIF29688_RS07345 (CDIF29688_01434) | - | 1458743..1459519 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF29688_RS07350 (CDIF29688_01435) | - | 1459834..1461732 (+) | 1899 | WP_021366547.1 | glutamine synthetase catalytic domain protein | - |
| CDIF29688_RS07355 (CDIF29688_01436) | - | 1461860..1462981 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF29688_RS07360 (CDIF29688_01437) | - | 1463180..1463512 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF29688_RS07365 (CDIF29688_01438) | - | 1463499..1464557 (+) | 1059 | WP_032509457.1 | DUF1700 domain-containing protein | - |
| CDIF29688_RS07370 (CDIF29688_01439) | - | 1464550..1465620 (+) | 1071 | WP_021366514.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF29688_RS07375 (CDIF29688_01440) | - | 1465722..1466258 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF29688_RS07380 (CDIF29688_01441) | - | 1466374..1467081 (+) | 708 | WP_021366455.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF29688_RS07385 (CDIF29688_01442) | - | 1467083..1467799 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF29688_RS07390 (CDIF29688_01443) | - | 1467801..1468559 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF29688_RS07395 (CDIF29688_01444) | - | 1468705..1470093 (+) | 1389 | WP_021366463.1 | two-component system sensor histidine kinase | - |
| CDIF29688_RS07400 (CDIF29688_01445) | - | 1470169..1470990 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF29688_RS07405 (CDIF29688_01446) | - | 1471241..1472395 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDIF29688_RS07410 (CDIF29688_01447) | - | 1472578..1472778 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF29688_RS07415 (CDIF29688_01448) | - | 1473199..1473627 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF29688_RS07420 (CDIF29688_01449) | - | 1473770..1474525 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF29688_RS07430 (CDIF29688_01451) | - | 1475226..1475732 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF29688_RS07435 (CDIF29688_01452) | - | 1475814..1476134 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF29688_RS07440 (CDIF29688_01453) | - | 1476303..1476500 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF29688_RS07445 (CDIF29688_01454) | - | 1476605..1477045 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF29688_RS07450 (CDIF29688_01455) | - | 1477294..1477737 (+) | 444 | WP_009896258.1 | phage tail terminator family protein | - |
| CDIF29688_RS07455 (CDIF29688_01456) | - | 1477742..1478806 (+) | 1065 | WP_011861188.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF29688_RS07460 (CDIF29688_01457) | - | 1478820..1479248 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF29688_RS07465 (CDIF29688_01458) | - | 1479374..1479820 (+) | 447 | WP_021366507.1 | phage tail assembly chaperone | - |
| CDIF29688_RS07470 (CDIF29688_01459) | - | 1479847..1480014 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF29688_RS07475 (CDIF29688_01460) | - | 1480014..1482467 (+) | 2454 | WP_021366454.1 | hypothetical protein | - |
| CDIF29688_RS07480 (CDIF29688_01461) | - | 1482467..1482889 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| CDIF29688_RS07485 (CDIF29688_01462) | - | 1483171..1484700 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| CDIF29688_RS07490 (CDIF29688_01463) | - | 1484716..1485042 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIF29688_RS07495 (CDIF29688_01464) | - | 1485042..1485470 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| CDIF29688_RS07500 (CDIF29688_01465) | - | 1485463..1486515 (+) | 1053 | WP_021366490.1 | baseplate J/gp47 family protein | - |
| CDIF29688_RS07505 (CDIF29688_01466) | - | 1486512..1487210 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| CDIF29688_RS07510 (CDIF29688_01467) | - | 1487211..1488194 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=218537 CDIF29688_RS07290 WP_003428218.1 1444700..1445746(+) (recA) [Clostridioides difficile strain DSM 29688]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=218537 CDIF29688_RS07290 WP_003428218.1 1444700..1445746(+) (recA) [Clostridioides difficile strain DSM 29688]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCCCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCCCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.