Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDIF29688_RS03960 Genome accession   NZ_CP019858
Coordinates   756377..757084 (+) Length   235 a.a.
NCBI ID   WP_021366255.1    Uniprot ID   A0A069AVD9
Organism   Clostridioides difficile strain DSM 29688     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 751377..762084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF29688_RS03925 (CDIF29688_00760) - 751400..751780 (+) 381 WP_003434522.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF29688_RS03930 (CDIF29688_00761) cdd1 752092..752337 (+) 246 WP_009888450.1 protein Cdd1 -
  CDIF29688_RS03935 (CDIF29688_00762) - 752555..752824 (-) 270 WP_003426848.1 DUF3795 domain-containing protein -
  CDIF29688_RS03945 (CDIF29688_00763) - 753782..754519 (-) 738 WP_003439186.1 ABC transporter permease -
  CDIF29688_RS03950 (CDIF29688_00764) - 754531..755292 (-) 762 WP_009902075.1 ABC transporter permease -
  CDIF29688_RS03955 (CDIF29688_00765) - 755292..756215 (-) 924 WP_025782660.1 ABC transporter ATP-binding protein -
  CDIF29688_RS03960 (CDIF29688_00766) scnR 756377..757084 (+) 708 WP_021366255.1 response regulator transcription factor Regulator
  CDIF29688_RS03965 (CDIF29688_00767) - 757129..758535 (+) 1407 WP_009895701.1 sensor histidine kinase -
  CDIF29688_RS03970 (CDIF29688_00768) - 760175..760564 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF29688_RS03975 (CDIF29688_00769) - 761434..761904 (+) 471 WP_009888463.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26730.20 Da        Isoelectric Point: 6.1479

>NTDB_id=218532 CDIF29688_RS03960 WP_021366255.1 756377..757084(+) (scnR) [Clostridioides difficile strain DSM 29688]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKEGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=218532 CDIF29688_RS03960 WP_021366255.1 756377..757084(+) (scnR) [Clostridioides difficile strain DSM 29688]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGAAGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A069AVD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.918

98.298

0.481
  micA Streptococcus pneumoniae Cp1015

40

100

0.4
  vicR Streptococcus mutans UA159

38.362

98.723

0.379

Multiple sequence alignment