Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   B1R45_RS17620 Genome accession   NZ_CP019856
Coordinates   3856401..3858626 (-) Length   741 a.a.
NCBI ID   WP_078049002.1    Uniprot ID   -
Organism   Pseudomonas azotoformans strain F77     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3851401..3863626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1R45_RS17585 (B1R45_17490) murB 3851796..3852815 (-) 1020 WP_078048998.1 UDP-N-acetylmuramate dehydrogenase -
  B1R45_RS17590 (B1R45_17495) - 3852812..3853276 (-) 465 WP_025858159.1 low molecular weight protein-tyrosine-phosphatase -
  B1R45_RS17595 (B1R45_17500) kdsB 3853276..3854040 (-) 765 WP_078048999.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B1R45_RS17600 (B1R45_17505) - 3854037..3854222 (-) 186 WP_003174668.1 Trm112 family protein -
  B1R45_RS17605 (B1R45_17510) lpxK 3854247..3855257 (-) 1011 WP_078049000.1 tetraacyldisaccharide 4'-kinase -
  B1R45_RS17610 (B1R45_17515) - 3855257..3855685 (-) 429 WP_078049001.1 ExbD/TolR family protein -
  B1R45_RS17615 (B1R45_17520) exbB 3855682..3856317 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B1R45_RS17620 (B1R45_17525) comA 3856401..3858626 (-) 2226 WP_078049002.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B1R45_RS17625 (B1R45_17530) - 3858762..3859277 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  B1R45_RS17630 (B1R45_17535) - 3859274..3860644 (-) 1371 WP_078049003.1 sensor histidine kinase -
  B1R45_RS17635 (B1R45_17540) - 3860631..3861359 (-) 729 WP_078049004.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80608.72 Da        Isoelectric Point: 11.1182

>NTDB_id=218495 B1R45_RS17620 WP_078049002.1 3856401..3858626(-) (comA) [Pseudomonas azotoformans strain F77]
MRTGMFAFALGLLALRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLVGLSWACISAQWALDDRLRPALDGQTRWVEG
WVTGLPQQTGEGVRFVLTDSRSRNARLPTRIRVSWRGGPLVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARNAWRDSVRQRLMAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYAL
IAGLARYGCWPRSWPWLPWACGLAFGAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWRVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALDGLFKGLGWLAGQVPAWIPADVPLGYWLVSLLGAVLLLLPKGVPFRVLGWPMLLLAV
FPPREWVPHGQVDVVQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
AAIAKGLPIKRVVGGETDGLPAFLGTQPCISGERWTWDGVTFELWQWPDAITGNPKSCVLRVQANGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWAFLERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=218495 B1R45_RS17620 WP_078049002.1 3856401..3858626(-) (comA) [Pseudomonas azotoformans strain F77]
ATGAGGACAGGGATGTTCGCGTTTGCGCTGGGGCTGCTGGCGCTGCGTTTTTTACCCGCGTTGCCCGCTACCGGCTGGCT
GATCGCCTTGCTGGTGCTGGCATTGATGCTGTTGCCATTTCGCACTTACCCCTTGGCGTTTTTCTTGGTGGGGCTGAGCT
GGGCCTGCATCAGCGCACAGTGGGCGCTGGATGATCGCCTACGGCCAGCATTGGACGGCCAGACACGCTGGGTGGAAGGG
TGGGTGACCGGGTTGCCGCAACAGACGGGCGAGGGCGTGCGTTTCGTGCTGACCGACAGTCGGTCGCGTAATGCCCGCTT
GCCCACACGCATTCGCGTCTCCTGGCGTGGCGGGCCGTTGGTGCGCAGTGGCGAGCGCTGGCGCCTGGCGGTCACCCTCA
AGCGACCAGCCGGGCTATTGAATTTCCACGGCTTTGATCAGGAGGCCTGGCTGCTGGCCCAGCGTATCGGTGCCACCGGC
ACGGTAAAGGACGGCGAGCGCCTGGCACCTGCACGCAATGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAGGCGGGCCTGATTGCGCTGGTACTGGGTGATGGCTCTGGATTGGCCGCCGCCGATTGGCAGGTCT
TGCAGGACACGGGCACTGTGCACCTGCTGGTCATCTCCGGCCAACACATCGGTTTGCTGGCGGGCTTGATCTACGCGTTG
ATCGCCGGGTTGGCGCGCTACGGCTGCTGGCCCCGCAGCTGGCCTTGGTTGCCTTGGGCGTGTGGCCTGGCGTTCGGCGC
CGCGCTGGGGTATGGCTTGCTGGCAGGCTTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTGGGGTTGGTGTTGTTGT
GGCGGTTGCGATTCCGGCATCTGGGACTGTGGTGGCCTTTGCTGCTGGCACTCAATGGGGTGCTGGTCCTGGAGCCGTTG
GCGAGCCTGCAACCCGGTTTCTGGCTGTCGTTTGCGGCGGTGGCGGTGTTGATCCTGGCGTTCGGTGGGCGGCTGGGCCC
CTGGCGCGTGTGGCAGGCGTGGACCCGGCCGCAATGGCTGATTGCTATTGGGTTGTTCCCGGTGCTGCTGGTGTTGGGGC
TGCCCATCAGCCTGAGTGCACCGTTCGCCAACCTGGTGGCGGTGCCGTGGATCAGCCTGGTGGTACTGCCGCTGGCGTTG
CTCGGGACGGCGTTGCTGCCGCTGCCGTTTGTGGGTGAAGGCTTGCTGTGGCTGGCGGGCGGTGCACTGGATGGGTTATT
CAAGGGCTTGGGCTGGTTGGCCGGGCAGGTGCCGGCGTGGATTCCGGCCGATGTGCCGTTGGGCTATTGGCTGGTGAGTC
TGCTCGGCGCCGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGCTGGGCTGGCCGATGCTGTTGCTGGCCGTG
TTTCCACCACGTGAATGGGTGCCCCATGGGCAGGTCGACGTGGTGCAGTTGGACGTCGGGCAGGGGCAGTCGTTGATCTT
GCGCACCCGTCACCATACCTTGCTGTATGACGCTGGCCCGCGCTCCGGAACCTTTGACCTCGGCGCGCGGGTGGTGCTGC
CATCGCTGCGAAAACTGGGGGTAGGGGCGTTGGACCTGATGCTGCTCAGCCATGCCGACGCAGATCATGCCGGCGGTGCG
GCGGCGATTGCCAAGGGCCTGCCGATCAAGCGCGTGGTGGGTGGAGAAACCGACGGGCTGCCGGCCTTTCTCGGCACTCA
GCCGTGTATCAGTGGCGAGCGCTGGACCTGGGACGGTGTGACCTTTGAACTCTGGCAGTGGCCTGATGCTATTACCGGCA
ACCCGAAGTCCTGTGTGTTGCGGGTGCAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGACATCGACCGCGCCGCCGAA
CAGGCCATGCTCGCCTCACCCCTGGCGGTGCCGACCGATTGGTTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCGTC
CTGGGCGTTCCTGGAGCGCCTCGCGCCGCGTTCCGTGCTTATTTCGCGGGGGCGTAGCAATGCGTTCGGCCATCCCCATC
CTCAGGTGATGGCGCGTTACCAGCGGCTGGGTAGCCAGGTGTATGACAGCGCCGAGCAGGGGGCGGTGCGCCTGCAATTG
GGCGCTTTCGCGCCACCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGCTACCTTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.833

97.166

0.591
  comA Ralstonia pseudosolanacearum GMI1000

35.597

100

0.382

Multiple sequence alignment