Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   B1R45_RS17615 Genome accession   NZ_CP019856
Coordinates   3855682..3856317 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas azotoformans strain F77     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3850682..3861317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B1R45_RS17580 (B1R45_17485) - 3851048..3851719 (+) 672 WP_078048997.1 Bax inhibitor-1/YccA family protein -
  B1R45_RS17585 (B1R45_17490) murB 3851796..3852815 (-) 1020 WP_078048998.1 UDP-N-acetylmuramate dehydrogenase -
  B1R45_RS17590 (B1R45_17495) - 3852812..3853276 (-) 465 WP_025858159.1 low molecular weight protein-tyrosine-phosphatase -
  B1R45_RS17595 (B1R45_17500) kdsB 3853276..3854040 (-) 765 WP_078048999.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  B1R45_RS17600 (B1R45_17505) - 3854037..3854222 (-) 186 WP_003174668.1 Trm112 family protein -
  B1R45_RS17605 (B1R45_17510) lpxK 3854247..3855257 (-) 1011 WP_078049000.1 tetraacyldisaccharide 4'-kinase -
  B1R45_RS17610 (B1R45_17515) - 3855257..3855685 (-) 429 WP_078049001.1 ExbD/TolR family protein -
  B1R45_RS17615 (B1R45_17520) exbB 3855682..3856317 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  B1R45_RS17620 (B1R45_17525) comA 3856401..3858626 (-) 2226 WP_078049002.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  B1R45_RS17625 (B1R45_17530) - 3858762..3859277 (+) 516 WP_012724913.1 DUF2062 domain-containing protein -
  B1R45_RS17630 (B1R45_17535) - 3859274..3860644 (-) 1371 WP_078049003.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=218494 B1R45_RS17615 WP_012724911.1 3855682..3856317(-) (exbB) [Pseudomonas azotoformans strain F77]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=218494 B1R45_RS17615 WP_012724911.1 3855682..3856317(-) (exbB) [Pseudomonas azotoformans strain F77]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTTGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAGTTGGACAAGGACAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTTGGCTTGCTGGGTACCGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTCTTTCACCGTTTCCTGCAACGTCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAAGGCGACCGTGACGTCGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment