Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   B0D95_RS17695 Genome accession   NZ_CP019799
Coordinates   4112565..4113968 (-) Length   467 a.a.
NCBI ID   WP_078045130.1    Uniprot ID   A0A1U9NDY7
Organism   Cellvibrio sp. PSBB023     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4105071..4119615 4112565..4113968 within 0


Gene organization within MGE regions


Location: 4105071..4119615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0D95_RS17660 (B0D95_17675) - 4105071..4105598 (-) 528 WP_078045126.1 GspH/FimT family protein -
  B0D95_RS17665 (B0D95_17680) - 4105828..4106391 (+) 564 WP_078045822.1 GspH/FimT family pseudopilin -
  B0D95_RS17670 (B0D95_17685) pilV 4106404..4106802 (+) 399 WP_078045127.1 type IV pilus modification protein PilV -
  B0D95_RS17675 (B0D95_17690) - 4106811..4107812 (+) 1002 WP_078045823.1 PilW family protein -
  B0D95_RS17680 (B0D95_17695) - 4107825..4108382 (+) 558 WP_078045128.1 PilX N-terminal domain-containing pilus assembly protein -
  B0D95_RS17685 (B0D95_17700) - 4108451..4112098 (+) 3648 WP_078045129.1 pilus assembly protein -
  B0D95_RS17690 (B0D95_17705) - 4112103..4112522 (+) 420 WP_078045824.1 type IV pilin protein -
  B0D95_RS17695 (B0D95_17710) pilR 4112565..4113968 (-) 1404 WP_078045130.1 sigma-54 dependent transcriptional regulator Regulator
  B0D95_RS17700 (B0D95_17715) - 4114011..4115675 (-) 1665 WP_078045131.1 PAS domain-containing sensor histidine kinase -
  B0D95_RS17705 (B0D95_17720) - 4115895..4117519 (+) 1625 Protein_3483 NAD+ synthase -
  B0D95_RS17710 (B0D95_17725) - 4117582..4118487 (-) 906 WP_078045825.1 outer membrane protein assembly factor BamD -
  B0D95_RS17715 (B0D95_17730) rluD 4118650..4119615 (+) 966 WP_078045132.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52063.44 Da        Isoelectric Point: 6.2014

>NTDB_id=218435 B0D95_RS17695 WP_078045130.1 4112565..4113968(-) (pilR) [Cellvibrio sp. PSBB023]
MTQKRALIIDDEPDIRELLEITLGRMQIHTDSADSVSSARQMLSNHSYDLCLTDMRLPDGKGLEIVELIQQRYPRLPVAV
ITAHGSVDTAIESMKAGAFDFISKPVNLATLRKLVNTAIESSQLAPQPLPKLTPIIGESKAIQDLIRSIEKLARSQAPVY
ISGESGSGKELVAHSIHDLGPRASNPFIAVNCGAIPRELMESEFFGHKKGSFTGAHQDKIGLFQAAEGGTLFFDEVADLP
LDMQVKLLRAIQEKSVRPVGAAEELATDVRILCATHKNLEVEVKEGRFRQDLFYRLNVIQLAVAPLRERREDIRLLTQHL
LNKLATDIGMPAPRLSIDAQRVLENYHFPGNVRELENILERAFTLCDSNIIEAQDLQLRGQGVNPDSSHEKTYGSGTRTS
SRSNIVDYPARCAEYSSLDEYLQDVEKEILCHALEQAKWNKTLAAKHLGISFRSLRYRLQKLGLDDE

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=218435 B0D95_RS17695 WP_078045130.1 4112565..4113968(-) (pilR) [Cellvibrio sp. PSBB023]
ATGACACAAAAACGCGCCTTAATTATTGATGATGAACCGGATATCCGCGAATTGTTGGAGATTACTCTGGGTCGTATGCA
GATTCATACAGACAGCGCAGATTCCGTCAGCAGCGCAAGACAGATGCTGTCCAACCACAGCTACGATCTTTGCCTCACAG
ATATGCGCCTGCCCGATGGCAAAGGCCTGGAAATTGTTGAACTCATTCAACAGCGCTATCCACGCTTACCCGTTGCTGTA
ATCACCGCCCACGGCAGTGTGGATACCGCCATTGAATCCATGAAAGCCGGCGCTTTTGATTTTATTTCCAAGCCGGTTAA
CCTCGCGACACTGCGCAAACTGGTAAATACGGCAATCGAATCAAGCCAACTTGCACCGCAACCATTGCCCAAGCTAACAC
CGATTATCGGCGAGTCAAAAGCGATTCAGGATTTGATTCGCAGCATTGAAAAACTGGCGCGCTCACAAGCACCGGTTTAC
ATCAGTGGCGAGTCGGGCTCGGGCAAAGAATTAGTCGCCCACTCTATCCACGACTTGGGCCCCCGCGCCAGCAATCCGTT
TATCGCCGTAAACTGCGGAGCCATACCACGCGAATTAATGGAAAGTGAGTTTTTTGGCCATAAAAAAGGCAGCTTTACCG
GCGCACACCAAGACAAGATTGGCCTGTTCCAGGCGGCAGAAGGCGGCACCTTATTTTTTGATGAAGTCGCCGATTTGCCG
TTGGACATGCAAGTAAAACTCTTGCGCGCCATTCAGGAAAAATCTGTACGCCCCGTTGGCGCCGCAGAAGAACTCGCCAC
CGATGTACGCATTTTGTGTGCGACACACAAAAATCTTGAAGTGGAAGTGAAGGAAGGACGCTTTCGCCAGGATTTATTCT
ACCGCCTGAATGTTATTCAACTAGCTGTCGCCCCGCTGCGAGAAAGACGCGAAGATATTCGCCTGCTAACCCAGCACCTA
CTCAATAAACTCGCGACTGATATTGGCATGCCCGCGCCCAGGCTTTCTATAGATGCGCAGCGCGTGCTGGAAAATTATCA
TTTTCCCGGCAATGTGCGTGAACTGGAAAATATTCTGGAGCGCGCATTTACACTCTGCGACAGCAATATCATTGAAGCAC
AGGATTTACAATTACGCGGCCAAGGCGTAAACCCCGATAGCTCTCACGAAAAAACCTATGGCAGCGGAACACGTACATCA
TCACGCAGCAATATAGTCGACTATCCCGCACGTTGTGCAGAATATTCATCATTAGATGAATACTTACAGGATGTTGAAAA
AGAAATTCTGTGCCATGCCCTGGAACAAGCGAAGTGGAATAAAACACTGGCAGCAAAACATTTGGGGATTAGTTTTAGAT
CTTTGCGTTACAGATTGCAGAAGTTGGGGTTGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1U9NDY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.645

99.572

0.604
  pilR Acinetobacter baumannii strain A118

48.62

100

0.49

Multiple sequence alignment