Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BW727_RS09135 Genome accession   NZ_CP019728
Coordinates   1838332..1838862 (-) Length   176 a.a.
NCBI ID   WP_062467832.1    Uniprot ID   -
Organism   Jeotgalibaca dankookensis strain EX-07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1833332..1843862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BW727_RS10555 (BW727_101831) - 1833336..1833548 (-) 213 WP_062467837.1 helix-turn-helix domain-containing protein -
  BW727_RS09115 (BW727_101832) dnaB 1833628..1834995 (-) 1368 WP_062467836.1 replicative DNA helicase -
  BW727_RS09120 (BW727_101833) rplI 1835133..1835585 (-) 453 WP_062467835.1 50S ribosomal protein L9 -
  BW727_RS09125 (BW727_101834) - 1835582..1837606 (-) 2025 WP_062467834.1 DHH family phosphoesterase -
  BW727_RS09130 (BW727_101835) rpsR 1838050..1838292 (-) 243 WP_062467833.1 30S ribosomal protein S18 -
  BW727_RS09135 (BW727_101836) ssb 1838332..1838862 (-) 531 WP_062467832.1 single-stranded DNA-binding protein Machinery gene
  BW727_RS09140 (BW727_101837) rpsF 1838904..1839194 (-) 291 WP_062467831.1 30S ribosomal protein S6 -
  BW727_RS09145 (BW727_101838) gyrA 1839354..1841912 (-) 2559 WP_062467830.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19815.37 Da        Isoelectric Point: 4.5491

>NTDB_id=218135 BW727_RS09135 WP_062467832.1 1838332..1838862(-) (ssb) [Jeotgalibaca dankookensis strain EX-07]
MINNVVLTGRLTKDVDLRYTSNGTAVGSFSIAVDRPFKSQSGERETDFINCVIWRKAAENFANFTRKGSLVGIEGRIQTR
NYENQQGQRVYVTEIVVDNFTLLESRSVTEQRPRETNSPSPASNYNQTNNQSNSNNQSSYSNSNNQENSFNDYNSNEDPF
LSSGKSIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=218135 BW727_RS09135 WP_062467832.1 1838332..1838862(-) (ssb) [Jeotgalibaca dankookensis strain EX-07]
ATGATTAATAATGTTGTATTAACAGGTAGATTAACTAAAGATGTCGATTTACGCTATACGTCAAATGGTACAGCAGTAGG
TTCGTTTAGTATTGCGGTTGACAGACCATTTAAAAGTCAATCAGGAGAACGAGAAACTGATTTTATTAATTGTGTTATTT
GGAGAAAAGCTGCTGAGAACTTTGCTAATTTTACACGTAAAGGATCTTTAGTTGGAATCGAAGGACGAATTCAAACGCGT
AACTACGAAAATCAACAAGGCCAACGTGTGTATGTTACAGAAATTGTAGTAGATAACTTTACGCTACTTGAATCAAGAAG
TGTAACAGAACAAAGACCAAGAGAAACAAACTCTCCAAGTCCTGCTTCTAATTACAATCAAACTAACAACCAATCAAACA
GTAATAATCAATCGTCTTACTCTAACTCAAACAACCAAGAAAATAGCTTTAATGACTATAATTCGAATGAAGATCCATTT
CTATCAAGTGGGAAATCGATAGATATATCAGATGATGATCTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.636

100

0.636
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.19

100

0.551

Multiple sequence alignment