Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIN_RS07320 Genome accession   NC_003212
Coordinates   1432339..1433385 (+) Length   348 a.a.
NCBI ID   WP_003766841.1    Uniprot ID   Q540Q2
Organism   Listeria innocua Clip11262     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1427339..1438385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN_RS07300 (lin1431) ymfI 1428372..1429103 (+) 732 WP_003771775.1 elongation factor P 5-aminopentanone reductase -
  LIN_RS07305 (lin1432) - 1429152..1430087 (+) 936 WP_003762172.1 helix-turn-helix domain-containing protein -
  LIN_RS07310 (lin1433) pgsA 1430177..1430755 (+) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIN_RS07315 (lin1434) cinA 1430822..1432069 (+) 1248 WP_010991531.1 competence/damage-inducible protein A Machinery gene
  LIN_RS07320 (lin1435) recA 1432339..1433385 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  LIN_RS07325 (lin1436) rny 1433686..1435248 (+) 1563 WP_003721904.1 ribonuclease Y -
  LIN_RS07330 (lin1437) - 1435364..1435861 (+) 498 WP_010991532.1 GNAT family N-acetyltransferase -
  LIN_RS07335 (lin1438) - 1435866..1436669 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  LIN_RS07340 (lin1439) - 1436686..1437048 (+) 363 WP_003762190.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38021.06 Da        Isoelectric Point: 4.7487

>NTDB_id=21806 LIN_RS07320 WP_003766841.1 1432339..1433385(+) (recA) [Listeria innocua Clip11262]
MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQAQGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQLKQGTDVMGNKT
KIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMAAEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKR
VREEYEIDGTNKEPLDENEETLSLLDDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=21806 LIN_RS07320 WP_003766841.1 1432339..1433385(+) (recA) [Listeria innocua Clip11262]
GTGAATGATCGTCAAGCGGCATTAGACCAAGCATTAAAACAAATTGAAAAACAATTCGGTAAAGGTTCCATTATGAAATT
AGGGGAACATTCAGACCAAAATATATCTACTATTTCTAGTGGCTCATTAGCATTAGATATTGCTTTAGGAGTTGGCGGAT
ATCCGCGGGGACGTATTATTGAAGTATACGGACCTGAGAGTTCTGGTAAAACAACTGTTGCACTACATGCGATTGCAGAA
GTCCAAGCACAAGGTGGAACAGCAGCATTTATCGACGCCGAACATGCTCTAGATCCAGCTTATGCAAAAAATCTAGGTGT
AAACATTGATGAGCTATTACTATCGCAACCGGATACAGGGGAACAAGCTTTAGAAATCGCTGAAGCACTAGTTAGAAGTG
GCGCTGTTGATATGTTAGTTATTGACTCTGTTGCAGCTCTTGTACCACGCGCTGAAATTGAAGGCGAGATGGGAGATGCC
CACGTTGGTTTGCAAGCACGTTTAATGTCCCAAGCTTTAAGAAAACTTTCAGGTGTTATTAATAAATCAAAAACGATTGC
TATCTTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGGAATCCTGAAATCACTCCTGGTGGCCGTGCGCTTA
AATTCTATTCTACTGTCCGTTTAGAAGTAAGACGTGCTGAGCAGTTGAAGCAAGGTACTGATGTAATGGGTAACAAAACA
AAAATAAAAGTTGTAAAAAATAAAGTAGCTCCACCATTCCGTATCGCTGAAGTGGATATTATGTACGGAGAAGGTATTTC
ACGTGAAGGTGAACTTGTTGATATGGCTGCTGAAGTTGATGTAATTAACAAGAGTGGTTCTTGGTATTCTTATAAAGAAG
AACGTATCGGACAAGGTCGTGAAAATGCAAAACAATATCTAAAAGAACACACAGACATTCGAGACGAAATCTCTAAACGC
GTTCGCGAAGAATACGAAATTGATGGCACTAACAAAGAACCTTTAGACGAAAATGAAGAAACATTAAGTTTGCTTGATGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q540Q2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

94.253

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

77.299

100

0.773
  recA Streptococcus pneumoniae D39

70.783

95.402

0.675
  recA Streptococcus pneumoniae R6

70.783

95.402

0.675
  recA Streptococcus pneumoniae TIGR4

70.783

95.402

0.675
  recA Streptococcus pneumoniae Rx1

70.783

95.402

0.675
  recA Streptococcus mitis NCTC 12261

69.88

95.402

0.667
  recA Streptococcus mutans UA159

66.571

99.713

0.664
  recA Streptococcus mitis SK321

69.277

95.402

0.661
  recA Streptococcus pyogenes NZ131

69.817

94.253

0.658
  recA Lactococcus lactis subsp. cremoris KW2

68.502

93.966

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.449

99.138

0.609
  recA Vibrio cholerae strain A1552

61.449

99.138

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Neisseria gonorrhoeae MS11

64.596

92.529

0.598
  recA Acinetobacter baumannii D1279779

60.058

98.563

0.592
  recA Helicobacter pylori 26695

59.942

98.276

0.589
  recA Helicobacter pylori strain NCTC11637

59.942

98.276

0.589
  recA Acinetobacter baylyi ADP1

58.96

99.425

0.586
  recA Pseudomonas stutzeri DSM 10701

60.355

97.126

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.006

94.54

0.586
  recA Ralstonia pseudosolanacearum GMI1000

66.019

88.793

0.586
  recA Glaesserella parasuis strain SC1401

63.009

91.667

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

91.954

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.115

0.56

Multiple sequence alignment