Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSPARA_RS05120 Genome accession   NZ_CP019684
Coordinates   1034496..1035266 (+) Length   256 a.a.
NCBI ID   WP_089189500.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1029496..1040266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPARA_RS05105 (CSPARA_1022) - 1031128..1032225 (+) 1098 WP_089182622.1 CinA family protein -
  CSPARA_RS05110 (CSPARA_1023) ilvC 1032292..1033314 (+) 1023 WP_089189498.1 ketol-acid reductoisomerase -
  CSPARA_RS05115 (CSPARA_1024) - 1033424..1034512 (+) 1089 WP_161492323.1 divergent polysaccharide deacetylase family protein -
  CSPARA_RS05120 (CSPARA_1025) dprA 1034496..1035266 (+) 771 WP_089189500.1 DNA-processing protein DprA Machinery gene
  CSPARA_RS05125 (CSPARA_1026) dprB 1035263..1035643 (+) 381 WP_089189501.1 Holliday junction resolvase RuvX Machinery gene
  CSPARA_RS09310 - 1036250..1036528 (+) 279 Protein_1021 hypothetical protein -
  CSPARA_RS09315 - 1037552..1037953 (+) 402 Protein_1022 methyl-accepting chemotaxis protein -
  CSPARA_RS05135 (CSPARA_1028) - 1037996..1038487 (-) 492 WP_089189503.1 HIT family protein -
  CSPARA_RS05140 (CSPARA_1029) trpC 1038490..1039272 (-) 783 WP_089189504.1 indole-3-glycerol phosphate synthase TrpC -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28531.11 Da        Isoelectric Point: 8.7193

>NTDB_id=217797 CSPARA_RS05120 WP_089189500.1 1034496..1035266(+) (dprA) [Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589]
MDILDKIPQDLLRLKNPPKTLYYKGNTDLLQMPKIAVVGSRKISFYTKNLISNLCLNLKKYGICVVSGGAIGCDITAHKA
AFPNTIAVFANGLNIIYPKTNSNLINQMYESSLVLSEYEPDEPPFKHRFLERNRIVVALSKAVVIAQGDIASGSLSSAKI
AKDLGIPIFVFPQRIDESKGTNLLLKQKDAILLDDFDEFGKKFGDNLQENLQKDEMLDFIKNNSNLTECLNKFGSKIYEY
ELLGKISINGFSVSVK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=217797 CSPARA_RS05120 WP_089189500.1 1034496..1035266(+) (dprA) [Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589]
ATGGATATATTAGATAAAATCCCACAAGATCTTTTAAGACTAAAAAATCCACCTAAAACGCTATACTATAAAGGCAATAC
CGATTTGTTGCAAATGCCAAAAATTGCAGTCGTTGGTTCAAGAAAAATATCATTTTATACTAAAAATTTGATATCAAATT
TATGCTTAAATCTTAAAAAATATGGCATTTGTGTAGTAAGCGGCGGTGCGATTGGATGCGATATAACAGCACACAAAGCC
GCTTTTCCAAACACCATAGCTGTTTTTGCAAATGGTTTAAATATCATTTATCCAAAAACAAATTCAAATTTAATAAATCA
AATGTATGAAAGCTCACTTGTTTTAAGTGAGTATGAGCCAGATGAGCCGCCATTTAAACATCGTTTTTTAGAGAGAAATC
GTATAGTTGTCGCACTTAGTAAAGCCGTTGTCATAGCCCAGGGCGATATCGCTAGTGGCTCACTTTCAAGTGCTAAAATA
GCCAAAGATTTAGGAATTCCTATATTTGTTTTTCCTCAAAGGATAGATGAAAGCAAAGGTACAAATTTGCTACTAAAACA
AAAAGATGCGATACTTTTAGATGATTTTGACGAATTTGGAAAGAAATTTGGCGATAACTTACAAGAAAATTTGCAAAAAG
ACGAAATGCTAGATTTTATAAAAAATAATTCAAATTTAACAGAGTGCTTAAATAAATTTGGAAGCAAAATTTACGAATAC
GAACTACTTGGAAAAATCAGTATAAATGGTTTTAGCGTGAGTGTGAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

91.406

0.492
  dprA Helicobacter pylori 26695

43.32

96.484

0.418

Multiple sequence alignment