Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CSPARA_RS05125 Genome accession   NZ_CP019684
Coordinates   1035263..1035643 (+) Length   126 a.a.
NCBI ID   WP_089189501.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1030263..1040643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPARA_RS05105 (CSPARA_1022) - 1031128..1032225 (+) 1098 WP_089182622.1 CinA family protein -
  CSPARA_RS05110 (CSPARA_1023) ilvC 1032292..1033314 (+) 1023 WP_089189498.1 ketol-acid reductoisomerase -
  CSPARA_RS05115 (CSPARA_1024) - 1033424..1034512 (+) 1089 WP_161492323.1 divergent polysaccharide deacetylase family protein -
  CSPARA_RS05120 (CSPARA_1025) dprA 1034496..1035266 (+) 771 WP_089189500.1 DNA-processing protein DprA Machinery gene
  CSPARA_RS05125 (CSPARA_1026) dprB 1035263..1035643 (+) 381 WP_089189501.1 Holliday junction resolvase RuvX Machinery gene
  CSPARA_RS09310 - 1036250..1036528 (+) 279 Protein_1021 hypothetical protein -
  CSPARA_RS09315 - 1037552..1037953 (+) 402 Protein_1022 methyl-accepting chemotaxis protein -
  CSPARA_RS05135 (CSPARA_1028) - 1037996..1038487 (-) 492 WP_089189503.1 HIT family protein -
  CSPARA_RS05140 (CSPARA_1029) trpC 1038490..1039272 (-) 783 WP_089189504.1 indole-3-glycerol phosphate synthase TrpC -
  CSPARA_RS05145 (CSPARA_1030) - 1039269..1040522 (-) 1254 WP_089188285.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14120.47 Da        Isoelectric Point: 9.9521

>NTDB_id=217798 CSPARA_RS05125 WP_089189501.1 1035263..1035643(+) (dprB) [Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589]
MIVAIDVGLKRIGVAISYENGVVLPLNAVIRKNRNQASKEISQLLQDYKAKKLVVGIPLDGSSEDEMTRRIKHFVNLINF
DGEIIFIDESFSSKEASDFAVINHKKKDGKLDSLSAMIILKRYIKS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=217798 CSPARA_RS05125 WP_089189501.1 1035263..1035643(+) (dprB) [Campylobacter sputorum bv. paraureolyticus LMG 11764 strain LMG 17589]
ATGATAGTAGCAATAGATGTTGGCTTAAAAAGAATAGGAGTTGCCATATCTTATGAAAATGGAGTAGTTTTGCCACTAAA
CGCAGTCATACGCAAAAATCGCAATCAAGCTTCAAAAGAAATAAGTCAGTTACTACAAGATTATAAAGCAAAAAAACTTG
TTGTTGGTATCCCACTTGACGGAAGTAGCGAAGATGAGATGACTAGACGCATAAAACACTTTGTAAATTTAATAAATTTT
GATGGTGAGATAATTTTTATTGATGAGAGTTTTTCAAGCAAGGAAGCTAGTGATTTTGCCGTTATAAATCATAAGAAAAA
AGATGGAAAACTAGATAGTTTAAGTGCAATGATAATACTTAAAAGATATATTAAAAGTTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.376

100

0.532

Multiple sequence alignment