Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSF_RS05195 Genome accession   NZ_CP019683
Coordinates   1049948..1050718 (+) Length   256 a.a.
NCBI ID   WP_089182625.1    Uniprot ID   -
Organism   Campylobacter sputorum bv. faecalis CCUG 20703     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1044948..1055718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSF_RS05180 (CSF_1036) - 1046580..1047677 (+) 1098 WP_089182622.1 CinA family protein -
  CSF_RS05185 (CSF_1037) ilvC 1047744..1048766 (+) 1023 WP_089188279.1 ketol-acid reductoisomerase -
  CSF_RS05190 (CSF_1038) - 1048807..1049964 (+) 1158 WP_151899096.1 divergent polysaccharide deacetylase family protein -
  CSF_RS05195 (CSF_1039) dprA 1049948..1050718 (+) 771 WP_089182625.1 DNA-processing protein DprA Machinery gene
  CSF_RS05200 (CSF_1040) dprB 1050715..1051095 (+) 381 WP_089188281.1 Holliday junction resolvase RuvX Machinery gene
  CSF_RS09540 - 1051160..1051933 (+) 774 Protein_1032 cache domain-containing protein -
  CSF_RS09545 - 1052714..1053115 (+) 402 Protein_1033 methyl-accepting chemotaxis protein -
  CSF_RS05210 (CSF_1042) - 1053158..1053649 (-) 492 WP_089188283.1 HIT family protein -
  CSF_RS05215 (CSF_1043) trpC 1053652..1054434 (-) 783 WP_089188284.1 indole-3-glycerol phosphate synthase TrpC -
  CSF_RS05220 (CSF_1044) - 1054431..1055684 (-) 1254 WP_089188285.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28558.14 Da        Isoelectric Point: 8.7193

>NTDB_id=217783 CSF_RS05195 WP_089182625.1 1049948..1050718(+) (dprA) [Campylobacter sputorum bv. faecalis CCUG 20703]
MDILDKIPQDLLRLKNPPKTLYYKGNTDLLQMPKIAVVGSRKISFYTKNLISNLCLNLKKYGICVVSGGAIGCDITAHKA
AFPNTIAVFANGLNIIYPKTNSNLINQMYENSLVLSEYEPDEPPFKHRFLERNRIVVALSKAVVIAQGDIASGSLSSAKI
AKDLGIPIFVFPQRIDESKGTNLLLKQKDAILLDDFDEFGKKFGDNLQENLQKDEMLDFIKNNSNLTECLNKFGSKIYEY
ELLGKISINGFSVSVK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=217783 CSF_RS05195 WP_089182625.1 1049948..1050718(+) (dprA) [Campylobacter sputorum bv. faecalis CCUG 20703]
ATGGATATATTAGATAAAATCCCGCAAGATCTTTTAAGACTAAAAAATCCACCTAAAACGCTATACTATAAAGGCAATAC
CGATTTGTTGCAAATGCCAAAAATTGCAGTCGTTGGTTCAAGAAAAATATCATTTTATACTAAAAATTTGATATCAAATT
TATGCTTAAATCTTAAAAAATATGGCATTTGTGTAGTAAGCGGCGGTGCGATTGGATGCGATATAACAGCACACAAAGCC
GCTTTTCCAAACACCATAGCTGTTTTTGCAAATGGTTTAAATATCATTTATCCAAAAACAAATTCAAATTTAATAAATCA
AATGTATGAAAATTCACTTGTTTTAAGTGAGTATGAGCCAGATGAGCCGCCATTTAAACATCGTTTTTTAGAGAGAAATC
GTATAGTTGTCGCACTTAGTAAAGCCGTTGTCATAGCCCAGGGCGATATCGCTAGTGGCTCACTTTCAAGTGCTAAAATA
GCCAAAGATTTAGGAATTCCTATATTTGTTTTTCCTCAAAGGATAGATGAAAGCAAAGGTACAAATTTGCTACTAAAACA
AAAAGATGCAATACTTTTAGATGATTTTGACGAATTTGGAAAGAAATTTGGCGATAACTTACAAGAAAATTTGCAAAAAG
ACGAAATGCTAGATTTTATAAAAAATAATTCAAATTTAACAGAGTGCTTAAATAAATTTGGAAGCAAAATTTACGAATAC
GAACTACTTGGAAAAATCAGTATAAATGGTTTTAGCGTGAGTGTAAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.274

91.406

0.496
  dprA Helicobacter pylori 26695

43.725

96.484

0.422

Multiple sequence alignment