Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CSPUT_RS05135 Genome accession   NZ_CP019682
Coordinates   1032577..1033347 (+) Length   256 a.a.
NCBI ID   WP_089182625.1    Uniprot ID   -
Organism   Campylobacter sputorum aubsp. sputorum RM3237     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1027577..1038347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSPUT_RS05120 (CSPUT_1018) - 1029209..1030306 (+) 1098 WP_089182622.1 CinA family protein -
  CSPUT_RS05125 (CSPUT_1019) ilvC 1030373..1031395 (+) 1023 WP_089182623.1 ketol-acid reductoisomerase -
  CSPUT_RS05130 (CSPUT_1020) - 1031436..1032593 (+) 1158 WP_143297535.1 divergent polysaccharide deacetylase family protein -
  CSPUT_RS05135 (CSPUT_1021) dprA 1032577..1033347 (+) 771 WP_089182625.1 DNA-processing protein DprA Machinery gene
  CSPUT_RS05140 (CSPUT_1022) dprB 1033344..1033724 (+) 381 WP_089182626.1 Holliday junction resolvase RuvX Machinery gene
  CSPUT_RS09465 - 1033787..1034548 (+) 762 Protein_1014 cache domain-containing protein -
  CSPUT_RS09470 - 1035341..1035742 (+) 402 Protein_1015 methyl-accepting chemotaxis protein -
  CSPUT_RS05150 (CSPUT_1024) - 1035785..1036276 (-) 492 WP_089182628.1 HIT family protein -
  CSPUT_RS05155 (CSPUT_1025) trpC 1036279..1037061 (-) 783 WP_089182629.1 indole-3-glycerol phosphate synthase TrpC -
  CSPUT_RS05160 (CSPUT_1026) - 1037058..1038311 (-) 1254 WP_089182630.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28558.14 Da        Isoelectric Point: 8.7193

>NTDB_id=217769 CSPUT_RS05135 WP_089182625.1 1032577..1033347(+) (dprA) [Campylobacter sputorum aubsp. sputorum RM3237]
MDILDKIPQDLLRLKNPPKTLYYKGNTDLLQMPKIAVVGSRKISFYTKNLISNLCLNLKKYGICVVSGGAIGCDITAHKA
AFPNTIAVFANGLNIIYPKTNSNLINQMYENSLVLSEYEPDEPPFKHRFLERNRIVVALSKAVVIAQGDIASGSLSSAKI
AKDLGIPIFVFPQRIDESKGTNLLLKQKDAILLDDFDEFGKKFGDNLQENLQKDEMLDFIKNNSNLTECLNKFGSKIYEY
ELLGKISINGFSVSVK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=217769 CSPUT_RS05135 WP_089182625.1 1032577..1033347(+) (dprA) [Campylobacter sputorum aubsp. sputorum RM3237]
ATGGATATATTAGATAAAATCCCGCAAGATCTTTTAAGACTAAAAAATCCACCTAAAACGCTATACTATAAAGGCAATAC
CGATTTGTTGCAAATGCCAAAAATTGCAGTCGTTGGTTCAAGAAAAATATCATTTTATACTAAAAATTTGATATCAAATT
TATGCTTAAATCTTAAAAAATATGGCATTTGCGTAGTAAGCGGCGGTGCGATTGGATGCGATATAACAGCACACAAAGCC
GCTTTTCCAAACACCATAGCTGTTTTTGCAAATGGTTTAAATATCATTTATCCAAAAACAAATTCAAATTTAATAAATCA
AATGTATGAAAATTCACTTGTTTTAAGTGAGTATGAGCCAGATGAGCCGCCATTTAAACATCGTTTTTTAGAGAGAAATC
GTATAGTTGTCGCACTTAGTAAAGCCGTTGTCATAGCTCAGGGCGATATCGCTAGTGGCTCACTTTCAAGTGCTAAAATA
GCCAAAGATTTAGGAATTCCTATATTTGTTTTTCCTCAAAGGATAGATGAAAGCAAAGGTACAAATTTGCTACTAAAACA
AAAAGATGCGATACTTTTAGATGATTTTGACGAATTTGGAAAGAAATTTGGCGATAACTTACAAGAAAATTTGCAAAAAG
ACGAAATGCTAGATTTTATAAAAAATAATTCAAATTTAACAGAGTGCTTAAATAAATTTGGAAGCAAAATTTACGAATAC
GAACTACTTGGAAAAATCAGTATAAATGGTTTTAGCGTGAGTGTGAAATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(7-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.274

91.406

0.496
  dprA Helicobacter pylori 26695

43.725

96.484

0.422

Multiple sequence alignment