Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | CSPUT_RS05140 | Genome accession | NZ_CP019682 |
| Coordinates | 1033344..1033724 (+) | Length | 126 a.a. |
| NCBI ID | WP_089182626.1 | Uniprot ID | - |
| Organism | Campylobacter sputorum aubsp. sputorum RM3237 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1028344..1038724
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSPUT_RS05120 (CSPUT_1018) | - | 1029209..1030306 (+) | 1098 | WP_089182622.1 | CinA family protein | - |
| CSPUT_RS05125 (CSPUT_1019) | ilvC | 1030373..1031395 (+) | 1023 | WP_089182623.1 | ketol-acid reductoisomerase | - |
| CSPUT_RS05130 (CSPUT_1020) | - | 1031436..1032593 (+) | 1158 | WP_143297535.1 | divergent polysaccharide deacetylase family protein | - |
| CSPUT_RS05135 (CSPUT_1021) | dprA | 1032577..1033347 (+) | 771 | WP_089182625.1 | DNA-processing protein DprA | Machinery gene |
| CSPUT_RS05140 (CSPUT_1022) | dprB | 1033344..1033724 (+) | 381 | WP_089182626.1 | Holliday junction resolvase RuvX | Machinery gene |
| CSPUT_RS09465 | - | 1033787..1034548 (+) | 762 | Protein_1014 | cache domain-containing protein | - |
| CSPUT_RS09470 | - | 1035341..1035742 (+) | 402 | Protein_1015 | methyl-accepting chemotaxis protein | - |
| CSPUT_RS05150 (CSPUT_1024) | - | 1035785..1036276 (-) | 492 | WP_089182628.1 | HIT family protein | - |
| CSPUT_RS05155 (CSPUT_1025) | trpC | 1036279..1037061 (-) | 783 | WP_089182629.1 | indole-3-glycerol phosphate synthase TrpC | - |
| CSPUT_RS05160 (CSPUT_1026) | - | 1037058..1038311 (-) | 1254 | WP_089182630.1 | tetratricopeptide repeat protein | - |
| CSPUT_RS05165 (CSPUT_1027) | - | 1038284..1038649 (-) | 366 | WP_089182631.1 | YkgJ family cysteine cluster protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14139.48 Da Isoelectric Point: 9.6749
>NTDB_id=217770 CSPUT_RS05140 WP_089182626.1 1033344..1033724(+) (dprB) [Campylobacter sputorum aubsp. sputorum RM3237]
MIVAIDVGLKRIGVAISYENGVVLPLNAVIRKNRNQASKEISQLLQDYKAKKLVVGIPLGGSSEDEMTRRIKHFVNLIYF
DGEIIFIDESFSSKEASDFAVINHKKKDGKLDSLSAMIILKRYIEN
MIVAIDVGLKRIGVAISYENGVVLPLNAVIRKNRNQASKEISQLLQDYKAKKLVVGIPLGGSSEDEMTRRIKHFVNLIYF
DGEIIFIDESFSSKEASDFAVINHKKKDGKLDSLSAMIILKRYIEN
Nucleotide
Download Length: 381 bp
>NTDB_id=217770 CSPUT_RS05140 WP_089182626.1 1033344..1033724(+) (dprB) [Campylobacter sputorum aubsp. sputorum RM3237]
ATGATAGTAGCTATAGATGTTGGCTTAAAAAGAATAGGAGTTGCCATATCTTATGAAAATGGAGTAGTTTTGCCACTAAA
CGCAGTCATACGCAAAAATCGCAATCAAGCTTCAAAAGAAATAAGTCAGTTACTACAAGATTATAAAGCAAAAAAACTTG
TTGTTGGTATCCCACTTGGCGGAAGTAGCGAAGATGAGATGACTAGACGCATAAAACACTTTGTAAATTTAATATATTTT
GATGGTGAGATAATTTTTATTGATGAGAGTTTTTCAAGCAAGGAAGCTAGCGATTTTGCCGTTATAAATCATAAGAAAAA
AGATGGAAAACTAGATAGTTTAAGTGCAATGATAATACTTAAAAGATATATTGAAAATTAA
ATGATAGTAGCTATAGATGTTGGCTTAAAAAGAATAGGAGTTGCCATATCTTATGAAAATGGAGTAGTTTTGCCACTAAA
CGCAGTCATACGCAAAAATCGCAATCAAGCTTCAAAAGAAATAAGTCAGTTACTACAAGATTATAAAGCAAAAAAACTTG
TTGTTGGTATCCCACTTGGCGGAAGTAGCGAAGATGAGATGACTAGACGCATAAAACACTTTGTAAATTTAATATATTTT
GATGGTGAGATAATTTTTATTGATGAGAGTTTTTCAAGCAAGGAAGCTAGCGATTTTGCCGTTATAAATCATAAGAAAAA
AGATGGAAAACTAGATAGTTTAAGTGCAATGATAATACTTAAAAGATATATTGAAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
50.376 |
100 |
0.532 |