Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ADP71_RS03235 Genome accession   NZ_CP019644
Coordinates   667982..668785 (-) Length   267 a.a.
NCBI ID   WP_019958661.1    Uniprot ID   -
Organism   Vitreoscilla sp. C1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662982..673785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADP71_RS03215 (ADP71_08010) - 663838..666150 (-) 2313 WP_158667087.1 LysM peptidoglycan-binding domain-containing protein -
  ADP71_RS03220 (ADP71_08020) - 666374..667099 (+) 726 WP_019958658.1 methyltransferase domain-containing protein -
  ADP71_RS03225 (ADP71_08030) rnhA 667086..667547 (+) 462 WP_019958659.1 ribonuclease HI -
  ADP71_RS03230 (ADP71_08040) - 667690..667872 (+) 183 WP_019958660.1 hypothetical protein -
  ADP71_RS03235 (ADP71_08050) comL 667982..668785 (-) 804 WP_019958661.1 outer membrane protein assembly factor BamD Machinery gene
  ADP71_RS03240 (ADP71_08060) rluD 668800..669894 (+) 1095 WP_019958662.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ADP71_RS03245 (ADP71_08080) pgeF 670138..670893 (+) 756 WP_019958664.1 peptidoglycan editing factor PgeF -
  ADP71_RS03250 (ADP71_08090) - 671056..673353 (+) 2298 WP_104931493.1 DNA internalization-related competence protein ComEC/Rec2 -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30642.36 Da        Isoelectric Point: 8.7206

>NTDB_id=217499 ADP71_RS03235 WP_019958661.1 667982..668785(-) (comL) [Vitreoscilla sp. C1]
MKKILIASCVALVLTGCANKGTSVDKDAQITQSWTVQQLYTEAQDDLNGKNYTRAVKLYDILQSRFPNGRYAQQAQLDKA
YAHYRDAEPAKALAELDSFEKKYPKHENLDYVFYLRGLVAFNEDTSFVTKLASQDWADRDQKANREAYGHFNTLITRWPD
SKYAPDARDRMSKLVVAFAGNEMAIARYYLNRGAYVAAANRAQNVIQHYQNTPFTEEALAILAASYDKLGQTQLSQDTQR
VLLSNFPQSQFSEGWKSNDIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=217499 ADP71_RS03235 WP_019958661.1 667982..668785(-) (comL) [Vitreoscilla sp. C1]
ATGAAAAAAATTTTAATTGCCAGCTGTGTGGCGCTTGTTTTAACAGGTTGTGCCAATAAAGGTACTTCTGTCGACAAAGA
TGCCCAAATCACCCAATCGTGGACTGTGCAGCAGTTGTATACAGAAGCACAAGATGACTTGAACGGCAAAAACTATACCC
GTGCTGTCAAATTATACGATATTTTGCAATCCCGTTTCCCAAATGGTCGTTATGCTCAACAAGCTCAGTTGGACAAAGCT
TATGCGCATTATCGCGATGCTGAGCCTGCTAAGGCGTTAGCGGAATTGGATAGTTTTGAGAAAAAATATCCAAAACACGA
AAATTTAGATTACGTGTTCTATCTACGCGGTTTGGTGGCTTTCAACGAAGACACCTCTTTTGTGACCAAATTGGCCTCTC
AAGATTGGGCTGACCGTGACCAAAAAGCCAACCGCGAAGCCTATGGCCACTTCAATACATTGATTACACGTTGGCCTGAC
AGCAAATACGCACCTGATGCGCGCGATCGCATGAGCAAATTGGTGGTGGCATTTGCTGGCAATGAAATGGCCATTGCACG
CTATTACTTAAACCGTGGTGCTTATGTTGCCGCAGCCAATCGTGCGCAAAACGTGATTCAACATTATCAAAACACACCGT
TTACCGAAGAGGCATTAGCCATCTTGGCAGCGTCTTACGATAAATTAGGTCAAACCCAATTAAGCCAAGACACGCAACGT
GTGTTGTTAAGCAATTTCCCGCAAAGCCAATTTTCGGAAGGTTGGAAGAGCAATGACATCCCTTGGTGGCGTTATTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

62.547

100

0.625
  comL Neisseria gonorrhoeae MS11

61.049

100

0.61

Multiple sequence alignment