Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   B0X71_RS18565 Genome accession   NZ_CP019640
Coordinates   3702108..3702581 (-) Length   157 a.a.
NCBI ID   WP_077590824.1    Uniprot ID   A0A1Q2L3B1
Organism   Planococcus lenghuensis strain Y42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3697108..3707581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0X71_RS18545 (B0X71_18610) rplI 3698184..3698633 (-) 450 WP_077590821.1 50S ribosomal protein L9 -
  B0X71_RS18550 (B0X71_18615) - 3698630..3700605 (-) 1976 Protein_3647 DHH family phosphoesterase -
  B0X71_RS18555 (B0X71_18620) - 3700619..3701569 (-) 951 WP_077590822.1 YybS family protein -
  B0X71_RS18560 (B0X71_18625) rpsR 3701820..3702059 (-) 240 WP_198038754.1 30S ribosomal protein S18 -
  B0X71_RS18565 (B0X71_18630) ssbA 3702108..3702581 (-) 474 WP_077590824.1 single-stranded DNA-binding protein Machinery gene
  B0X71_RS18570 (B0X71_18635) ltrA 3702716..3704581 (-) 1866 WP_077591058.1 group II intron reverse transcriptase/maturase -
  B0X71_RS18575 (B0X71_18640) - 3705454..3705519 (-) 66 Protein_3652 single-stranded DNA-binding protein -
  B0X71_RS18580 (B0X71_18645) rpsF 3705563..3705850 (-) 288 WP_077590826.1 30S ribosomal protein S6 -
  B0X71_RS18585 (B0X71_18650) - 3706118..3706681 (+) 564 WP_232336743.1 DUF3267 domain-containing protein -
  B0X71_RS18590 (B0X71_18655) - 3706698..3707060 (-) 363 WP_077590827.1 gamma-glutamylcyclotransferase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17367.88 Da        Isoelectric Point: 4.5984

>NTDB_id=217493 B0X71_RS18565 WP_077590824.1 3702108..3702581(-) (ssbA) [Planococcus lenghuensis strain Y42]
MEITSKVYLFLSNGVAACNFTLAVNRTFSNAQGEREADFINCVTWRKQAENTANFLKKGSLAGVEGRIQTRSYENNEGKR
VYVTEVVADSVQFLEPKGANQDRSQSPAYGGQNQPSYQQNQPSRQGNQGNQGNYTRVDDDPFGNSGPIEVSDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=217493 B0X71_RS18565 WP_077590824.1 3702108..3702581(-) (ssbA) [Planococcus lenghuensis strain Y42]
CTGGAGATTACTTCAAAAGTTTACCTATTCCTATCCAATGGAGTAGCAGCCTGTAACTTCACACTTGCAGTGAATCGCAC
GTTCTCCAATGCACAAGGAGAGCGGGAAGCGGATTTCATAAACTGTGTGACATGGCGCAAACAAGCTGAAAACACGGCAA
ACTTTCTTAAAAAAGGCAGTCTTGCCGGCGTCGAAGGCCGAATCCAGACACGGAGCTATGAAAACAATGAAGGTAAGCGC
GTATATGTGACTGAAGTCGTCGCCGACAGTGTCCAGTTCCTGGAACCGAAAGGCGCGAATCAGGATCGTTCACAGAGCCC
TGCCTATGGAGGGCAAAACCAGCCATCCTATCAGCAGAACCAACCTTCACGCCAAGGAAATCAAGGTAATCAAGGAAATT
ATACACGCGTAGATGATGATCCGTTTGGCAACAGCGGACCGATCGAAGTATCGGACGATGATCTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(9-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Q2L3B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.862

100

0.586
  ssb Latilactobacillus sakei subsp. sakei 23K

51.235

100

0.529
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.773

56.051

0.363

Multiple sequence alignment