Detailed information NTG0217408

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: CW750_RS06020
• Genome accession: NZ_CP025136
• Coordinates: 1244453..1245064 (+)
• Length: 203 a.a.
• NCBI ID: WP_016264642.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain WiKim0072
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1239453..1250064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CW750_RS06005 (CW750_06000)	hexB	1241120..1243081 (+)	1962	WP_035146236.1	DNA mismatch repair endonuclease MutL	Machinery gene
CW750_RS06010 (CW750_06005)	-	1243081..1243626 (+)	546	WP_016264640.1	Maf family protein	-
CW750_RS06015 (CW750_06010)	-	1243639..1244202 (+)	564	WP_016264641.1	TIGR00730 family Rossman fold protein	-
CW750_RS06020 (CW750_06015)	ruvA	1244453..1245064 (+)	612	WP_016264642.1	Holliday junction branch migration protein RuvA	Machinery gene
CW750_RS06025 (CW750_06020)	ruvB	1245077..1246084 (+)	1008	WP_016264643.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
CW750_RS06030 (CW750_06025)	queA	1246099..1247130 (+)	1032	WP_011374077.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
CW750_RS06035 (CW750_06030)	-	1247157..1247678 (+)	522	WP_016264644.1	GNAT family protein	-
CW750_RS06040 (CW750_06035)	arcA	1247886..1249121 (+)	1236	WP_016264645.1	arginine deiminase	-

Sequence

Protein

• Length: 203 a.a.
• Molecular weight: 22189.38 Da
• Isoelectric Point: 4.8129

>NTDB_id=217408 CW750_RS06020 WP_016264642.1 1244453..1245064(+) (ruvA) [Latilactobacillus sakei strain WiKim0072]
MYEYLKGLVTAVNPYYVVLEVQGIGYQLQVANPYRYTESMSEVVQIYVHQAVRDTDITLFGFYDLDEKQLFQKLISVSGI
GPKSALAILANSDHSGLIQAIMNDDIGYLTKFPGVGKKTAQQITLDLKGKLGDLEQSATLVGQTAIDLGSQGDSPELSDA
LAALSALGYSAREVKAITPKLTDFAAQTTDQYLREGLRLLMKK

Nucleotide

• Length: 612 bp

>NTDB_id=217408 CW750_RS06020 WP_016264642.1 1244453..1245064(+) (ruvA) [Latilactobacillus sakei strain WiKim0072]
ATGTATGAATATTTAAAGGGTTTAGTGACGGCGGTTAATCCGTATTACGTTGTTTTGGAAGTCCAAGGAATTGGCTATCA
ATTACAAGTTGCCAACCCATATCGGTATACGGAATCGATGAGCGAAGTGGTTCAAATTTATGTCCACCAAGCAGTACGCG
ATACTGATATTACGCTTTTTGGTTTTTACGACTTAGATGAAAAACAACTTTTCCAAAAATTAATCAGTGTTTCCGGAATT
GGTCCCAAGAGTGCCTTGGCAATTTTGGCTAACAGTGATCATTCTGGCTTAATTCAGGCGATTATGAACGATGATATTGG
GTACTTAACGAAGTTCCCAGGCGTCGGGAAGAAGACGGCCCAACAGATTACCTTAGATCTTAAAGGTAAGTTAGGTGATC
TAGAACAAAGCGCAACGTTAGTCGGCCAAACGGCAATTGATTTAGGCAGCCAAGGTGACTCACCTGAATTAAGTGATGCG
CTAGCAGCTTTGAGTGCACTTGGCTATTCCGCACGGGAAGTCAAAGCGATTACGCCTAAGTTAACTGATTTTGCAGCGCA
AACAACTGATCAATATCTCAGAGAAGGTTTGCGGTTATTGATGAAGAAATAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (157-201)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	48.78	100	0.493
ruvA	Streptococcus pneumoniae R6	48.78	100	0.493
ruvA	Streptococcus pneumoniae D39	48.78	100	0.493
ruvA	Bacillus subtilis subsp. subtilis str. 168	46.078	100	0.463