Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   BZK07_RS07850 Genome accession   NZ_CP019593
Coordinates   1577925..1578422 (-) Length   165 a.a.
NCBI ID   WP_084570115.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD705     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572925..1583422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZK07_RS07825 (BZK07_07885) gcvPB 1573087..1574559 (-) 1473 WP_000202179.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  BZK07_RS07830 (BZK07_07890) gcvPA 1574552..1575898 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  BZK07_RS07835 (BZK07_07895) gcvT 1575918..1577009 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  BZK07_RS07840 (BZK07_07900) - 1577168..1577692 (-) 525 WP_001015120.1 shikimate kinase -
  BZK07_RS07845 (BZK07_07905) - 1577682..1577828 (-) 147 WP_001789879.1 hypothetical protein -
  BZK07_RS07850 (BZK07_07910) comGF 1577925..1578422 (-) 498 WP_084570115.1 competence type IV pilus minor pilin ComGF Machinery gene
  BZK07_RS07855 (BZK07_07915) comGE 1578340..1578639 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  BZK07_RS07860 (BZK07_07920) comGD 1578626..1579072 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  BZK07_RS07865 (BZK07_07925) comGC 1579050..1579361 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  BZK07_RS07870 (BZK07_07930) comGB 1579375..1580445 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  BZK07_RS07875 (BZK07_07935) comGA 1580417..1581391 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  BZK07_RS07880 (BZK07_07940) - 1581443..1582066 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  BZK07_RS07885 (BZK07_07945) - 1582063..1582392 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  BZK07_RS07890 (BZK07_07950) - 1582392..1583378 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19167.86 Da        Isoelectric Point: 10.2192

>NTDB_id=216654 BZK07_RS07850 WP_084570115.1 1577925..1578422(-) (comGF) [Staphylococcus aureus strain GD705]
MILSKVTNKFVLFQKTPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=216654 BZK07_RS07850 WP_084570115.1 1577925..1578422(-) (comGF) [Staphylococcus aureus strain GD705]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAACACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGCATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

96.364

100

0.964

Multiple sequence alignment