Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CWI26_RS11120 Genome accession   NZ_CP025043
Coordinates   2252040..2252501 (-) Length   153 a.a.
NCBI ID   WP_100881793.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247040..2257501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS11105 (CWI26_11105) - 2248616..2250322 (-) 1707 WP_099806597.1 ABC transporter ATP-binding protein -
  CWI26_RS11115 (CWI26_11115) - 2250689..2251942 (+) 1254 WP_014637301.1 IS110 family transposase -
  CWI26_RS11120 (CWI26_11120) rcrR 2252040..2252501 (-) 462 WP_100881793.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CWI26_RS11125 (CWI26_11125) - 2252643..2253659 (+) 1017 WP_100881794.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CWI26_RS11130 (CWI26_11130) galU 2253678..2254580 (+) 903 WP_023371721.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CWI26_RS11135 (CWI26_11135) - 2254600..2255277 (-) 678 WP_100881795.1 rhomboid family intramembrane serine protease -
  CWI26_RS11140 (CWI26_11140) - 2255261..2255803 (-) 543 WP_100881796.1 5-formyltetrahydrofolate cyclo-ligase -
  CWI26_RS11145 (CWI26_11145) - 2255844..2256971 (-) 1128 WP_099806603.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17669.29 Da        Isoelectric Point: 9.3772

>NTDB_id=216656 CWI26_RS11120 WP_100881793.1 2252040..2252501(-) (rcrR) [Streptococcus suis strain AH681]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRYKQLVLTEKGQSKICHLKAFHEEMHRSLFQGIQKEEFHLIKQVADQLKENIRNYKSSGKKSIES

Nucleotide


Download         Length: 462 bp        

>NTDB_id=216656 CWI26_RS11120 WP_100881793.1 2252040..2252501(-) (rcrR) [Streptococcus suis strain AH681]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATCAGTGAAACGATTGCTAAAGAATACGA
TGTGGAGCACTTAGCTGGTCCACAGGGATGGGCCTTGCGTTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTATAAGCAGTTGGTTTTGACGGAAAAAGGACAGAGTAAGATCTGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCGCTCGCTTTTTCAGGGAATTCAAAAGGAAGAATTTCATCTGATCAAGCAGGTGGCTG
ATCAATTAAAAGAAAATATTCGAAATTATAAGTCTAGTGGTAAAAAGTCAATAGAAAGTTGA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

44.286

91.503

0.405

Multiple sequence alignment