Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   BZJ79_RS08000 Genome accession   NZ_CP019592
Coordinates   1620445..1621131 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GD5     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1615445..1626131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZJ79_RS07980 (BZJ79_07995) rpsT 1616359..1616610 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  BZJ79_RS07985 (BZJ79_08000) holA 1616655..1617629 (-) 975 WP_084578698.1 DNA polymerase III subunit delta -
  BZJ79_RS07990 (BZJ79_08005) comEC 1617686..1619887 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BZJ79_RS07995 (BZJ79_08010) - 1619892..1620353 (-) 462 WP_084578699.1 ComE operon protein 2 -
  BZJ79_RS08000 (BZJ79_08015) comEA 1620445..1621131 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  BZJ79_RS08005 (BZJ79_08020) - 1621171..1621887 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  BZJ79_RS08010 (BZJ79_08025) rsfS 1621890..1622243 (-) 354 WP_001088020.1 ribosome silencing factor -
  BZJ79_RS08015 (BZJ79_08030) yqeK 1622244..1622828 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BZJ79_RS08020 (BZJ79_08035) nadD 1622818..1623387 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  BZJ79_RS08025 (BZJ79_08040) yhbY 1623390..1623680 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  BZJ79_RS08030 (BZJ79_08045) aroE 1623684..1624490 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  BZJ79_RS08035 (BZJ79_08050) yqeH 1624504..1625604 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=216617 BZJ79_RS08000 WP_001825349.1 1620445..1621131(-) (comEA) [Staphylococcus aureus strain GD5]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=216617 BZJ79_RS08000 WP_001825349.1 1620445..1621131(-) (comEA) [Staphylococcus aureus strain GD5]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment