Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   NMA_RS02165 Genome accession   NC_003116
Coordinates   397246..397695 (+) Length   149 a.a.
NCBI ID   WP_002237378.1    Uniprot ID   A0A0U1RHA9
Organism   Neisseria meningitidis Z2491     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392246..402695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS02160 (NMA0423) comE 396694..397158 (+) 465 WP_010981060.1 ComEA family DNA-binding protein Machinery gene
  NMA_RS02165 (NMA0424) comP 397246..397695 (+) 450 WP_002237378.1 type IV pilin protein Machinery gene
  NMA_RS14510 (NMA0425) - 397785..398179 (-) 395 Protein_405 5'-nucleotidase -
  NMA_RS02175 - 398250..398462 (-) 213 WP_002234366.1 SWIM zinc finger family protein -
  NMA_RS02180 (NMA0427) - 398752..399807 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -
  NMA_RS02185 (NMA0428) - 399821..401467 (+) 1647 WP_002237377.1 TIGR02391 family protein -
  NMA_RS02190 (NMA0429) - 401471..401893 (+) 423 WP_002246501.1 very short patch repair endonuclease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16864.83 Da        Isoelectric Point: 9.7951

>NTDB_id=21630 NMA_RS02165 WP_002237378.1 397246..397695(+) (comP) [Neisseria meningitidis Z2491]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYVEKAKINTVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide


Download         Length: 450 bp        

>NTDB_id=21630 NMA_RS02165 WP_002237378.1 397246..397695(+) (comP) [Neisseria meningitidis Z2491]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATGTTGAGAAAGCAAAGATAAATACAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U1RHA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

99.329

100

0.993
  comP Neisseria meningitidis 8013

98.658

100

0.987
  comP Neisseria subflava NJ9703

48.98

98.658

0.483

Multiple sequence alignment