Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NMA_RS01415 Genome accession   NC_003116
Coordinates   255227..255661 (-) Length   144 a.a.
NCBI ID   WP_173024106.1    Uniprot ID   -
Organism   Neisseria meningitidis Z2491     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 250227..260661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA_RS01390 (NMA0264) pilE 250476..250988 (-) 513 WP_010981065.1 pilin Machinery gene
  NMA_RS01395 (NMA0265) - 252156..252548 (-) 393 Protein_251 pilin -
  NMA_RS01400 (NMA0266) - 252682..253110 (-) 429 Protein_252 pilin -
  NMA_RS01405 (NMA0267) - 253273..253650 (-) 378 Protein_253 pilin -
  NMA_RS01410 (NMA0268) - 254404..254817 (-) 414 Protein_254 pilin -
  NMA_RS01415 (NMA0269) pilE 255227..255661 (-) 435 WP_173024106.1 pilin Machinery gene
  NMA_RS01420 (NMA0270) - 255766..256113 (-) 348 Protein_256 pilin -
  NMA_RS14175 (NMA0271) - 256171..256485 (-) 315 Protein_257 pilin -
  NMA_RS14185 - 256650..256850 (-) 201 Protein_258 pilin -
  NMA_RS01435 (NMA0273) - 256879..257208 (-) 330 WP_002215210.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NMA_RS14890 - 257286..257372 (-) 87 Protein_260 DUF2061 domain-containing protein -
  NMA_RS14375 - 257526..257657 (-) 132 Protein_261 DUF2061 domain-containing protein -
  NMA_RS01450 (NMA0274) - 257779..258732 (+) 954 WP_002247085.1 D-2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15329.10 Da        Isoelectric Point: 8.2554

>NTDB_id=21626 NMA_RS01415 WP_173024106.1 255227..255661(-) (pilE) [Neisseria meningitidis Z2491]
MTNPSFLAEGQKSAVTEYYLNHGEWPANNSSAGVATSASDIKGKYVEKVEVANGVITAEMKSSGVNNEIKGKKLSLWTKR
QDGSVKWFCGQPVTRAANAKAANADDVAADGTNKIDTKHLPSTCRDASSAVCIETPPTAFYKNT

Nucleotide


Download         Length: 435 bp        

>NTDB_id=21626 NMA_RS01415 WP_173024106.1 255227..255661(-) (pilE) [Neisseria meningitidis Z2491]
ATGACGAATCCATCCTTTTTGGCCGAAGGTCAAAAATCAGCCGTCACAGAGTATTACCTGAATCACGGCGAATGGCCCGC
CAACAACAGTTCTGCCGGCGTGGCAACCTCCGCCTCCGACATCAAAGGCAAATATGTTGAGAAAGTTGAAGTCGCAAACG
GCGTCATTACCGCCGAAATGAAATCAAGCGGCGTAAACAACGAAATCAAAGGCAAAAAACTCTCCCTGTGGACCAAGCGT
CAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGCCAACGCCAAAGCCGCCAACGCCGACGACGT
CGCCGCCGACGGCACCAACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACGCTTCATCTGCCGTTTGCATAG
AAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(7-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.4

86.806

0.646
  pilE Neisseria gonorrhoeae MS11

71.774

86.111

0.618

Multiple sequence alignment