Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BZG42_RS07915 Genome accession   NZ_CP019557
Coordinates   1673157..1673648 (-) Length   163 a.a.
NCBI ID   WP_155995814.1    Uniprot ID   -
Organism   Streptococcus sp. DAT741     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1668157..1678648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG42_RS07900 (BZG42_07960) - 1669079..1669732 (+) 654 WP_024533053.1 DUF1129 family protein -
  BZG42_RS07905 (BZG42_07965) - 1669904..1672411 (-) 2508 WP_155995816.1 pneumococcal-type histidine triad protein -
  BZG42_RS07910 (BZG42_07970) rpsR 1672767..1673006 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  BZG42_RS07915 (BZG42_07975) ssbA 1673157..1673648 (-) 492 WP_155995814.1 single-stranded DNA-binding protein Machinery gene
  BZG42_RS07920 (BZG42_07980) rpsF 1673660..1673950 (-) 291 WP_024533051.1 30S ribosomal protein S6 -
  BZG42_RS07925 (BZG42_07985) - 1674109..1675098 (-) 990 WP_155995812.1 lipoate--protein ligase -
  BZG42_RS07930 (BZG42_07990) - 1675181..1676620 (-) 1440 WP_120172126.1 6-phospho-beta-glucosidase -
  BZG42_RS07935 (BZG42_07995) - 1676675..1677280 (-) 606 WP_155995810.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18112.86 Da        Isoelectric Point: 4.7294

>NTDB_id=216231 BZG42_RS07915 WP_155995814.1 1673157..1673648(-) (ssbA) [Streptococcus sp. DAT741]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRSVREGQGGYSTGSSFAGGNDYNSSYQAPSQSTPNFAREESPFGTSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=216231 BZG42_RS07915 WP_155995814.1 1673157..1673648(-) (ssbA) [Streptococcus sp. DAT741]
ATGATAAATAATGTAGTATTGGTTGGTCGTATGACCCGCGATGCAGAACTTCGTTACACCCCGTCTAATCAGGCTGTTGC
GACTTTTACTTTAGCGGTCAACCGTAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTGATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAGAAAGGTGCACTGATTGGTATTACAGGTCGTATCCAGACCCGT
AGTTATGATAATCAACAAGGGCAACGTGTCTACGTTACAGAAGTCGTTGCAGAAAGTTTTCAACTTCTTGAGAGTCGCTC
TGTTCGTGAAGGACAAGGCGGTTATTCTACTGGTTCTTCATTTGCTGGGGGAAATGATTATAACTCATCTTATCAAGCAC
CATCACAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGGACAAGCAATCCGATGGACATATCAGACGATGAC
CTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.601
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.577
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment