Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMB_RS10495 Genome accession   NC_003112
Coordinates   2131623..2132087 (-) Length   154 a.a.
NCBI ID   WP_162467384.1    Uniprot ID   -
Organism   Neisseria meningitidis MC58     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126623..2137087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS10475 (NMB2012) - 2128211..2129302 (-) 1092 WP_002225876.1 XRE family transcriptional regulator -
  NMB_RS10480 (NMB2013) - 2129318..2129962 (-) 645 WP_002223148.1 hypothetical protein -
  NMB_RS11390 - 2130319..2130471 (+) 153 WP_002223150.1 hypothetical protein -
  NMB_RS12245 (NMB2015) - 2130728..2130996 (+) 269 Protein_2037 5'-nucleotidase -
  NMB_RS10490 (NMB2016) comP 2131086..2131535 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMB_RS10495 (NMB2017) comE 2131623..2132087 (-) 465 WP_162467384.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16501.79 Da        Isoelectric Point: 10.9585

>NTDB_id=21616 NMB_RS10495 WP_162467384.1 2131623..2132087(-) (comE) [Neisseria meningitidis MC58]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=21616 NMB_RS10495 WP_162467384.1 2131623..2132087(-) (comE) [Neisseria meningitidis MC58]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment