Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BXU08_RS13790 Genome accession   NZ_CP019511
Coordinates   3017603..3018157 (-) Length   184 a.a.
NCBI ID   WP_077510576.1    Uniprot ID   A0A1S6FM52
Organism   Sphingomonas sp. LM7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3012603..3023157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXU08_RS13765 (BXU08_13940) - 3013838..3014959 (+) 1122 WP_077510571.1 homoserine O-acetyltransferase -
  BXU08_RS13770 (BXU08_13945) - 3014956..3015375 (+) 420 WP_077510572.1 GNAT family N-acetyltransferase -
  BXU08_RS13775 (BXU08_13950) metW 3015372..3015965 (+) 594 WP_077510573.1 methionine biosynthesis protein MetW -
  BXU08_RS13780 (BXU08_13955) - 3015962..3016822 (+) 861 WP_077510574.1 pirin family protein -
  BXU08_RS13785 (BXU08_13960) - 3017103..3017555 (-) 453 WP_077510575.1 hypothetical protein -
  BXU08_RS13790 (BXU08_13965) ssb 3017603..3018157 (-) 555 WP_077510576.1 single-stranded DNA-binding protein Machinery gene
  BXU08_RS13795 (BXU08_13970) - 3018211..3018384 (+) 174 WP_077510577.1 DUF4169 family protein -
  BXU08_RS13800 (BXU08_13975) - 3018381..3020237 (-) 1857 WP_077510578.1 ferrous iron transporter B -
  BXU08_RS13805 (BXU08_13980) - 3020234..3020524 (-) 291 WP_376787760.1 ferrous iron transport protein A -
  BXU08_RS13810 (BXU08_13985) - 3020562..3021218 (-) 657 WP_077510580.1 COQ9 family protein -
  BXU08_RS13815 (BXU08_13990) - 3021218..3022099 (-) 882 WP_253190379.1 DMT family transporter -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19199.78 Da        Isoelectric Point: 5.0421

>NTDB_id=216109 BXU08_RS13790 WP_077510576.1 3017603..3018157(-) (ssb) [Sphingomonas sp. LM7]
MAGSVNKVILIGNLGRDPESRSFQNGGKVVELRIATSESWKDRNSGERKEKTEWHTVKVFNEGLANVAEKYLRKGSKVYI
EGALTTRKWQDPQGNDRYSTEVTLQGFNSVLTMLDGAPGQGGGAGRSSGGGGDDWGASGGDEFSGQSSSRGGSGGGGNFN
GGGQKSGGNFGGGFPDDLDDDVPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=216109 BXU08_RS13790 WP_077510576.1 3017603..3018157(-) (ssb) [Sphingomonas sp. LM7]
ATGGCCGGCAGCGTCAACAAGGTCATTCTGATCGGCAATCTCGGGCGCGATCCCGAATCGCGGTCGTTCCAGAACGGCGG
CAAGGTGGTCGAGCTCCGCATCGCCACGTCGGAAAGCTGGAAGGACCGCAACTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACACGGTCAAGGTCTTCAACGAAGGCCTTGCCAACGTCGCCGAGAAATATCTGCGCAAGGGCAGCAAGGTCTATATC
GAAGGCGCGCTGACCACCCGCAAGTGGCAGGACCCGCAGGGCAATGACCGCTATTCGACCGAAGTCACGCTTCAAGGCTT
CAATTCGGTGCTGACCATGCTGGACGGCGCGCCCGGCCAGGGCGGCGGCGCGGGTCGCAGCAGCGGTGGCGGCGGCGATG
ACTGGGGCGCCAGCGGCGGCGACGAGTTCTCGGGCCAGTCGTCGAGCCGCGGCGGAAGCGGTGGCGGCGGCAACTTCAAC
GGCGGCGGCCAGAAGAGCGGCGGCAATTTCGGCGGCGGCTTCCCCGACGATCTCGACGACGACGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S6FM52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.489
  ssb Vibrio cholerae strain A1552

49.444

97.826

0.484
  ssb Neisseria meningitidis MC58

37.017

98.37

0.364

Multiple sequence alignment