Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BZG29_RS25165 Genome accession   NZ_CP019510
Coordinates   5726994..5728073 (-) Length   359 a.a.
NCBI ID   WP_077408506.1    Uniprot ID   -
Organism   Janthinobacterium sp. LM6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5721994..5733073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG29_RS25155 (BZG29_25170) - 5723062..5726013 (-) 2952 WP_077408504.1 ribonucleoside-diphosphate reductase subunit alpha -
  BZG29_RS25160 (BZG29_25175) ampD 5726405..5727016 (-) 612 WP_077408505.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  BZG29_RS25165 (BZG29_25180) pilR 5726994..5728073 (-) 1080 WP_077408506.1 sigma-54 dependent transcriptional regulator Regulator
  BZG29_RS25170 (BZG29_25185) - 5728194..5728454 (-) 261 WP_077408507.1 PP0621 family protein -
  BZG29_RS25175 (BZG29_25190) ccsA 5728451..5729254 (-) 804 WP_077408508.1 cytochrome c biogenesis protein CcsA -
  BZG29_RS25180 (BZG29_25195) - 5729581..5730120 (+) 540 WP_077408509.1 hypothetical protein -
  BZG29_RS25185 (BZG29_25200) - 5730188..5731132 (-) 945 WP_253192915.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38648.95 Da        Isoelectric Point: 8.8085

>NTDB_id=216100 BZG29_RS25165 WP_077408506.1 5726994..5728073(-) (pilR) [Janthinobacterium sp. LM6]
MSRPSPRSSPPTADGMPPAPQLSGNSLPMQALRAQIGRIARCGAPVAIRGESGTGKELAARAIHAQGARASFPFIAVNCG
AIPEALMEAEFFGCRPGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQEHRVRKLGGSTDEAVDVRILC
ASQHGLTRGVAAGTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLSPHRAVSLAPPVLAALAAYAFPGNVRELE
NVLERALAFADGGVIALDGLALPSAAGNVPLRAAPAMPAVLERQLCLPGMAAYGVANVLPLDVYLRQAERDMIMLALVQA
RYHRARAARQLGLSVRQLRYRMQKLTIQEALFDECMDDR

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=216100 BZG29_RS25165 WP_077408506.1 5726994..5728073(-) (pilR) [Janthinobacterium sp. LM6]
ATGTCCCGTCCCAGCCCCCGTTCCAGCCCGCCGACCGCCGACGGCATGCCACCGGCGCCGCAACTGAGCGGCAACTCGCT
GCCCATGCAGGCGCTGCGCGCGCAGATCGGCCGCATCGCCCGCTGCGGCGCGCCGGTGGCCATCCGCGGCGAATCGGGCA
CAGGCAAGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCAGTTTCCCGTTTATCGCCGTCAACTGCGGC
GCCATTCCCGAAGCGCTGATGGAAGCGGAATTCTTCGGCTGCCGCCCGGGTGCCTATACGGGCGCGCTGCACGAGCGCCA
GGGCTTGTTCCAGGCGGCCCACGGCGGCAGCCTGCTGCTCGACGAAGTCGACGATCTGCCGCTGGCCATGCAGGTGAAAC
TGTTGCGCGTGCTGCAAGAGCACCGCGTGCGCAAGCTGGGCGGCAGTACTGACGAAGCTGTCGACGTGCGCATCCTGTGC
GCCAGCCAGCATGGCCTGACGCGCGGCGTGGCCGCCGGAACGTTTCGCCAGGACCTGTTTTACCGCCTGAATGTGATCGA
GCTGGCGCTGCCGCCGCTGCGCGAACGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTCGCGCGCCTGTCGCCGC
ACCGGGCCGTGAGCCTGGCGCCGCCGGTGCTGGCGGCCCTGGCCGCATATGCGTTTCCCGGCAATGTGCGCGAACTGGAA
AACGTGCTGGAACGGGCGCTGGCCTTTGCCGATGGCGGCGTGATCGCGCTCGACGGGCTGGCCTTGCCCTCCGCGGCGGG
CAACGTGCCCTTGCGGGCGGCGCCGGCAATGCCGGCTGTGTTGGAGCGGCAACTGTGTCTGCCTGGCATGGCGGCGTATG
GCGTGGCCAACGTCTTGCCGCTGGATGTGTATTTGCGCCAGGCCGAGCGCGACATGATCATGCTGGCGCTGGTGCAGGCG
CGTTACCACCGCGCACGGGCGGCGCGCCAGCTGGGCTTGAGCGTGCGCCAGTTGCGTTACCGCATGCAGAAATTGACGAT
ACAGGAAGCCCTATTTGATGAGTGCATGGACGATAGATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(23-188)

Bacterial regulatory protein, Fis family (HTH_8)

(305-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.02

95.543

0.487
  pilR Acinetobacter baumannii strain A118

43.373

92.479

0.401

Multiple sequence alignment