Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   CU118_RS06270 Genome accession   NZ_CP024998
Coordinates   1261307..1262296 (-) Length   329 a.a.
NCBI ID   WP_054190139.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256307..1267296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS06255 (CU118_06255) acsA 1257509..1259215 (-) 1707 WP_054190136.1 acetate--CoA ligase -
  CU118_RS06260 (CU118_06260) - 1259383..1260015 (+) 633 WP_054190137.1 hypothetical protein -
  CU118_RS06265 (CU118_06265) - 1260040..1261209 (+) 1170 WP_054190138.1 acetoin utilization protein AcuC -
  CU118_RS06270 (CU118_06270) ccpA 1261307..1262296 (-) 990 WP_054190139.1 catabolite control protein A Regulator
  CU118_RS06275 (CU118_06275) - 1262369..1262482 (-) 114 WP_001788994.1 hypothetical protein -
  CU118_RS06280 (CU118_06280) - 1262836..1263927 (-) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  CU118_RS06290 (CU118_06290) - 1265114..1266478 (-) 1365 WP_054191876.1 hypothetical protein -
  CU118_RS06295 (CU118_06295) - 1266552..1267043 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36032.23 Da        Isoelectric Point: 5.7655

>NTDB_id=216015 CU118_RS06270 WP_054190139.1 1261307..1262296(-) (ccpA) [Staphylococcus aureus strain 55-99-44]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNSIQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=216015 CU118_RS06270 WP_054190139.1 1261307..1262296(-) (ccpA) [Staphylococcus aureus strain 55-99-44]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCGCAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAGGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGTAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTTGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATAGTATTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCCAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCGAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

48.182

100

0.483
  ccpA Streptococcus gordonii str. Challis substr. CH1

46.809

100

0.468
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462

Multiple sequence alignment