Detailed information NTG0215980

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BZG33_RS09950
• Genome accession: NZ_CP019466
• Coordinates: 1698285..1699145 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain RIVM0610
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693285..1704145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BZG33_RS09930 (BZG33_09915)	dapD	1693795..1694616 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
BZG33_RS09935 (BZG33_09920)	pgi	1694826..1696469 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
BZG33_RS09945 (BZG33_09930)	pilG	1696979..1698211 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
BZG33_RS09950 (BZG33_09935)	pilD	1698285..1699145 (+)	861	WP_003689814.1	A24 family peptidase	Machinery gene
BZG33_RS09955 (BZG33_09940)	coaE	1699142..1699774 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
BZG33_RS09960 (BZG33_09945)	-	1699767..1699976 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
BZG33_RS09965 (BZG33_09950)	pilF	1700062..1701738 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BZG33_RS09980 (BZG33_09960)	-	1702076..1702522 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
BZG33_RS09985 (BZG33_09965)	-	1702526..1703500 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
BZG33_RS09995 (BZG33_09975)	rplU	1703724..1704032 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=215980 BZG33_RS09950 WP_003689814.1 1698285..1699145(+) (pilD) [Neisseria gonorrhoeae strain RIVM0610]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=215980 BZG33_RS09950 WP_003689814.1 1698285..1699145(+) (pilD) [Neisseria gonorrhoeae strain RIVM0610]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441