Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   CU118_RS03275 Genome accession   NZ_CP024998
Coordinates   648844..650904 (+) Length   686 a.a.
NCBI ID   WP_054190217.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 643844..655904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS03250 (CU118_03250) rpe 644319..644963 (+) 645 WP_054190221.1 ribulose-phosphate 3-epimerase -
  CU118_RS03255 (CU118_03255) - 644970..645611 (+) 642 WP_054190220.1 thiamine diphosphokinase -
  CU118_RS03260 (CU118_03260) rpmB 645991..646179 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  CU118_RS03265 (CU118_03265) - 646622..646996 (+) 375 WP_054190219.1 Asp23/Gls24 family envelope stress response protein -
  CU118_RS03270 (CU118_03270) fakA 647011..648657 (+) 1647 WP_054191855.1 fatty acid kinase catalytic subunit FakA -
  CU118_RS03275 (CU118_03275) recG 648844..650904 (+) 2061 WP_054190217.1 ATP-dependent DNA helicase RecG Machinery gene
  CU118_RS03290 (CU118_03290) fapR 651367..651939 (+) 573 WP_001548538.1 transcription factor FapR -
  CU118_RS03295 (CU118_03295) plsX 651944..652930 (+) 987 WP_054190216.1 phosphate acyltransferase PlsX -
  CU118_RS03300 (CU118_03300) fabD 652923..653849 (+) 927 WP_054190215.1 ACP S-malonyltransferase -
  CU118_RS03305 (CU118_03305) fabG 653842..654576 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  CU118_RS03315 (CU118_03315) - 654882..655115 (+) 234 WP_000426914.1 acyl carrier protein -

Sequence


Protein


Download         Length: 686 a.a.        Molecular weight: 78385.98 Da        Isoelectric Point: 6.1562

>NTDB_id=215980 CU118_RS03275 WP_054190217.1 648844..650904(+) (recG) [Staphylococcus aureus strain 55-99-44]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTTPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQIQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDLDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=215980 CU118_RS03275 WP_054190217.1 648844..650904(+) (recG) [Staphylococcus aureus strain 55-99-44]
TTGGCGAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTACCAACTAGATATGAAGATAATACAGTGATTGATT
TGAACCAAGCAGAAGACCAATCTAACGTTACGATAGAAGGACAAGTATATACAACACCAGTAGTTGCATTTTTTGGAAGA
AACAAATCAAAATTAACCGTTCATTTAATGGTGAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCATATTTAAA
AAAGAAAATCGAATTAAATCAAACAATAACTGTTAAAGGTAAATGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGTACACAAATTCAAGAAAATGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGC
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTGGAGACCTTGGACTTTACTTTGAACACGTTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTATTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACTTAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTTGTTGCTGCAATTTGTATGTATGCGTTAAAAACGGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCATTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGGTTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTGTTTATGACAGCAACCCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCTCTTATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTGTCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAGATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTAAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTCGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516

  recG/mmsA Streptococcus pneumoniae R6

50.388

94.023

0.474

  recG/mmsA Streptococcus pneumoniae R36A

50.388

94.023

0.474

  recG Neisseria meningitidis strain C311

39.82

97.376

0.388


Multiple sequence alignment