Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BZG33_RS00325 Genome accession   NZ_CP019466
Coordinates   53239..56268 (-) Length   1009 a.a.
NCBI ID   WP_025455759.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain RIVM0610     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48239..61268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZG33_RS00300 (BZG33_00290) - 49728..50117 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  BZG33_RS00305 (BZG33_00295) - 50280..50659 (-) 380 Protein_50 VOC family protein -
  BZG33_RS00310 (BZG33_00300) carA 50713..51846 (-) 1134 WP_003694721.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  BZG33_RS00325 (BZG33_00325) pilC 53239..56268 (-) 3030 WP_025455759.1 PilC family type IV pilus tip adhesin Machinery gene
  BZG33_RS14540 pilC 56268..56390 (-) 123 WP_306807989.1 hypothetical protein Machinery gene
  BZG33_RS00345 (BZG33_00345) apbC 57799..58878 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  BZG33_RS00355 (BZG33_00355) - 59252..59761 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  BZG33_RS00365 (BZG33_00360) nadR 60102..60542 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  BZG33_RS00370 (BZG33_00365) hpaC 60657..61157 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1009 a.a.        Molecular weight: 110545.00 Da        Isoelectric Point: 9.8721

>NTDB_id=215946 BZG33_RS00325 WP_025455759.1 53239..56268(-) (pilC) [Neisseria gonorrhoeae strain RIVM0610]
MNERKQPEVKWKGQYNQSALKDKGRERTFSHTSQKNKFGITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDT
AELNKRGNAVNWIHTTRPGLAGYGYDGIRCGSAQDCPKLTYKTRFSFDNPNLVKTRGGLDRHTEPSRENSPIYKLKDHPW
LGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLVYTTEGHRISLGNWQRETTAMAYYLNAKLHLLDKKQIENIAPG
KTVRLGVLKPSIDVKTQNTGLSGLLNFWSKWDIKDNGQIPVKLGLPQVKAGRCINKPNPNKNTKAPSPALTAPALWFGPV
QNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGRHSLAALDTQNIKSREPNFNSRQTVIRLPGGVYKINPVKNGG
RVAGFNGNDGKNDTFGIYKDRLVTPEADEWSEVLLPWTARYYGNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDK
PRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDERSYELKLSYIPGTMERKDIENQDSTLAKELRTFAEKGYVGDR
YGVDGGFVLRSITDDQDRQKHFFMFGAMGLGGRGAYALDLSKIDSNPVGVSMFDVQNESKNNGVKLGYTVGTPQIGKTQN
GKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLIKKIEVQGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFD
LSSDKPSEWTVRTIFQGTKPITSAPAVSRLADKRVVIFGTGSDLSEEDVVGKDQQYIYGIFDDDKGTGTVKVTVQNGTGG
GLLEQTLTKENNTLFLSNNKASGGSNGKGWVVRLREGERVTVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGA
LTPRSARPIVPDHDSVAQYSGHKKTADGKSVPIGCMWKNGKTACPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGT
FKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3030 bp        

>NTDB_id=215946 BZG33_RS00325 WP_025455759.1 53239..56268(-) (pilC) [Neisseria gonorrhoeae strain RIVM0610]
ATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGAAGGGTCAATATAATCAATCAGCATTAAAGGACAAAGGCAGGGAGCG
GACATTTAGCCATACGAGCCAGAAAAACAAATTCGGCATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTG
TTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACC
GCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACGACGG
TATCCGTTGCGGAAGTGCCCAAGACTGTCCCAAACTTACCTATAAAACCCGATTTTCCTTCGATAATCCCAACTTGGTAA
AAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAGCCGCGAAAATTCGCCCATTTACAAATTGAAGGATCATCCATGG
TTGGGCGTGTCTTTCAATTTGGGCGGCGAGGGTACCGCCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGA
TGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACGACAGAAGGCCACCGTATTTCCCTTGGCAACTGGCAGCGCG
AAACGACCGCCATGGCCTATTATCTGAACGCCAAGCTGCACCTGCTGGACAAAAAACAGATTGAAAATATCGCGCCAGGC
AAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACACAAAATACGGGGCTTAGCGGCTTGCTAAATTT
TTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGCA
TCAATAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCCCTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTG
CAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGA
GCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCG
AGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGTGTACAAGATCAACCCGGTCAAGAACGGCGGC
CGGGTCGCGGGTTTTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTACAAGGACAGGCTCGTCACACCTGAGGC
CGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCTCGGTATTACGGTAATGACGATATATTTAAAACATTCAACCAAC
CAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGATGACAATGACAAA
CCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGAT
GGTGCATATCTTCAAAAAAACCGGCACGGATGAACGCAGCTACGAACTGAAGCTCAGCTACATCCCCGGTACGATGGAGC
GTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGC
TACGGCGTGGACGGCGGCTTTGTCTTGCGCAGCATTACAGATGACCAAGACAGGCAAAAACATTTCTTTATGTTCGGCGC
AATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGATTTAAGCAAAATCGACAGCAACCCGGTCGGCGTTTCCATGTTTG
ATGTCCAAAACGAGAGTAAAAATAATGGCGTGAAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAAC
GGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGT
GTATGATTTGGGAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCGTCCCCCA
CGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGAT
TTGAGCAGCGACAAGCCGTCCGAGTGGACTGTACGCACTATTTTCCAAGGCACAAAACCGATTACCTCCGCGCCCGCCGT
TTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGCACGGGCAGCGATTTGAGTGAAGAGGATGTAGTCGGTAAGGATC
AACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGGGACGGTTAAGGTAACGGTACAAAACGGCACGGGAGGC
GGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCTTGTTCCTGAGCAATAATAAGGCATCCGGCGGATCGAACGG
CAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCA
CCATCCGTAGCTATACGGGTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCA
TTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACGATTCGGTTGCGCAATATTCCGGCCATAAGAAAACCGCCGA
CGGCAAGTCCGTCCCTATAGGCTGTATGTGGAAAAACGGCAAAACCGCCTGCCCGAACGGATATGTTTACGACAAGCCGG
TTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACA
TTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTT
GGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(484-820)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.352

100

0.7

Multiple sequence alignment