Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CVT30_RS34790 Genome accession   NZ_CP024989
Coordinates   7872224..7874359 (+) Length   711 a.a.
NCBI ID   WP_045560971.1    Uniprot ID   A0ABU4MHG1
Organism   Streptomyces sp. AMCC400023     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7867224..7879359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVT30_RS34765 (CVT30_35035) - 7867960..7868856 (-) 897 WP_237314308.1 pseudouridine-5'-phosphate glycosidase -
  CVT30_RS34770 (CVT30_35040) - 7868965..7869393 (+) 429 WP_177261673.1 VOC family protein -
  CVT30_RS34775 (CVT30_35045) - 7869525..7870079 (-) 555 WP_045560974.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  CVT30_RS34780 (CVT30_35050) - 7870164..7871033 (-) 870 WP_045560973.1 glycerophosphodiester phosphodiesterase family protein -
  CVT30_RS34785 (CVT30_35055) - 7871314..7872183 (+) 870 WP_045560972.1 MHYT domain-containing protein -
  CVT30_RS34790 (CVT30_35060) uvrB 7872224..7874359 (+) 2136 WP_045560971.1 excinuclease ABC subunit UvrB Machinery gene
  CVT30_RS34795 (CVT30_35065) - 7874530..7875108 (+) 579 WP_045560970.1 TerD family protein -
  CVT30_RS34800 (CVT30_35070) - 7875155..7877233 (+) 2079 WP_045560969.1 TerD family protein -
  CVT30_RS34805 (CVT30_35075) - 7877545..7878552 (+) 1008 WP_237310641.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 79879.42 Da        Isoelectric Point: 4.8830

>NTDB_id=215933 CVT30_RS34790 WP_045560971.1 7872224..7874359(+) (uvrB) [Streptomyces sp. AMCC400023]
MRPVSKIERTVAPFEVVSPYQPSGDQPTAIADLARRIGSGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEFDRDALLRRFVDIQYTRNDLAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDQQLYVFPASHYVAGPERLERAANDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGREPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYL
SATPGQYELSRSDGHVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQVAYNTARGIDPQPLRKKINDIVAQIAREDVDTEQLLGSGYRQGKDGKGAKAPVPSLGG
RSAKSAKGRAKAGETVPTDRPAADLAQQIEDMTERMRAAAAELQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=215933 CVT30_RS34790 WP_045560971.1 7872224..7874359(+) (uvrB) [Streptomyces sp. AMCC400023]
ATGCGGCCCGTTTCCAAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAGCGGCGACCAGCC
CACGGCCATCGCCGACCTCGCCCGGCGCATCGGATCAGGTGAGAAGGACGTCGTGCTGCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGCCCGACCCTGGTGATGGCGCCGAACAAGACACTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTGCTGCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAACGCCTGCGGCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCA
CAGGAGTACGTGGACCGCATGGTCCCCCTCAAGGTCGGCGAGGAGTTCGACCGGGACGCGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACCCGCAACGACCTGGCGTTCAGCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCCCACTACGTCGCCGGCCCCGAGCGCCTGGAGCGCGC
CGCCAACGACATCGAGAAGGAGCTGGGGGAGCGTCTCGCCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGGACGACCTACGACCTGGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCGAGCCGGGCTCCCCGCCGAACACCCTGCTGGACTACTTCCCGGACGACTTCCTCCTCGTCATCGACGA
GTCCCATGTGACCGTGCCCCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTTCCGTCCGCCCTGGACAACCGCCCCCTGAAATGGGAGGAGTTCCAGGAACGCGTCGGCCAGACGGTGTACCTC
TCGGCCACCCCCGGCCAGTACGAGCTGTCCCGCTCCGACGGCCATGTCGAGCAGATCATCCGCCCCACCGGCCTGGTCGA
CCCCGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAACGCACCGAGAAGGACG
AGCGGGTCCTCGTCACCACTCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTCGGTATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACCCTGCGCCGCGTCGAACTGCTGCGCGAGCTGCGCGCCGGTGAGTACGACGTCCT
CGTCGGCATCAACCTCCTCCGGGAGGGCCTCGACCTCCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCGGACAAGGAGG
GCTTCCTGCGCTCCGGGACCTCACTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTGTCGGGTCAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGGCGCCGGGAGAAGCAGGTCGCGTACAACAC
GGCCCGCGGCATCGACCCCCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACGTCGACA
CCGAGCAGCTGCTCGGCTCGGGCTATCGCCAGGGCAAGGACGGCAAGGGTGCCAAGGCCCCCGTGCCCTCCCTCGGCGGC
AGGTCGGCCAAGTCCGCCAAGGGCAGGGCCAAGGCCGGCGAGACCGTCCCGACCGACCGCCCCGCGGCCGATCTCGCCCA
GCAGATCGAGGACATGACCGAGCGCATGCGCGCGGCCGCAGCGGAGCTGCAGTTCGAGATCGCCGCCCGGCTGCGTGACG
AGGTGTCCGAGATGAAGAAGGAACTGCGGCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(667-700)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.957

97.046

0.553
  uvrB Streptococcus pneumoniae R6

56.957

97.046

0.553
  uvrB Streptococcus pneumoniae D39

56.957

97.046

0.553