Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BST95_RS18350 Genome accession   NZ_CP019450
Coordinates   3898119..3899504 (+) Length   461 a.a.
NCBI ID   WP_084200864.1    Uniprot ID   A0AAP8SLK2
Organism   Halioglobus japonicus strain NBRC 107739     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3893119..3904504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST95_RS18335 (BST95_18330) - 3893827..3894693 (+) 867 WP_084200862.1 outer membrane protein assembly factor BamD -
  BST95_RS18340 (BST95_18335) - 3894732..3896363 (-) 1632 WP_084200863.1 NAD+ synthase -
  BST95_RS18345 (BST95_18340) - 3896499..3898118 (+) 1620 WP_229801917.1 sensor histidine kinase -
  BST95_RS18350 (BST95_18345) pilR 3898119..3899504 (+) 1386 WP_084200864.1 sigma-54-dependent transcriptional regulator Regulator
  BST95_RS18355 (BST95_18350) - 3899517..3899954 (-) 438 WP_146004269.1 type IV pilin protein -
  BST95_RS18360 (BST95_18355) - 3899951..3902200 (-) 2250 WP_084200866.1 pilus assembly protein -
  BST95_RS18365 (BST95_18360) - 3902197..3902679 (-) 483 WP_084200867.1 hypothetical protein -
  BST95_RS18370 (BST95_18365) - 3902663..3903556 (-) 894 WP_169843996.1 PilW family protein -
  BST95_RS18375 (BST95_18370) - 3903562..3903909 (-) 348 WP_146004270.1 hypothetical protein -
  BST95_RS18380 (BST95_18375) - 3903939..3904478 (-) 540 WP_084200870.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49900.46 Da        Isoelectric Point: 4.8200

>NTDB_id=215908 BST95_RS18350 WP_084200864.1 3898119..3899504(+) (pilR) [Halioglobus japonicus strain NBRC 107739]
MAAQSVLIVDDEPDIRELLDITLSRMGLETHSAASLGEAQARISEVVPDLCLTDMKLPDGNGISLVEYIQRDFPQMPVAM
ITAHGSVETAISALKAGAFDFISKPIELETLRNLVNSALQLEGDTSRADSAVDHDLIGSAPSVERLRKQIIKLARSQAPV
HIRGESGSGKEVVARLIHNNGPRAAGSFVAVNCGAIPPDLMESELFGHVKGSFTGATSDKPGLFQAAAGGTLFLDEVADL
PLGMQVKLLRAIQEKSVRPVGASEEQPTDVRLLSATHKNLAAEVEVGRFRNDLYYRINVIDVQVPSLRERREDLPALAKT
ILGRISSEEGTAKATLDASALDALASYDFPGNVRELENVLERAFALSDSGTITGDDLQFPSNAPVMRSPGTRTRKTDRPG
SEIWNISDADGDLEGFLEDIERKVLSSALEENRWNRTAAAKQLGISFRSLRYRLKKLGLDD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=215908 BST95_RS18350 WP_084200864.1 3898119..3899504(+) (pilR) [Halioglobus japonicus strain NBRC 107739]
ATGGCAGCGCAAAGCGTTCTCATCGTTGACGACGAACCTGATATTCGCGAACTACTGGACATCACCCTGAGCCGCATGGG
TCTCGAAACCCACAGCGCTGCGAGCCTGGGCGAAGCCCAGGCGCGGATCAGCGAGGTTGTTCCCGACCTGTGCCTGACTG
ACATGAAGCTACCCGACGGCAATGGAATCAGCCTGGTTGAGTATATTCAGCGCGACTTTCCCCAGATGCCCGTGGCGATG
ATTACCGCCCATGGCAGCGTGGAAACGGCAATTTCCGCCCTCAAGGCAGGCGCCTTCGATTTTATTTCCAAGCCGATTGA
ACTGGAGACCCTGCGCAACCTGGTCAACAGTGCCCTGCAACTGGAAGGCGACACCAGTCGCGCTGACAGCGCCGTCGATC
ACGACCTGATTGGCTCTGCACCGTCAGTGGAAAGGCTGCGCAAACAAATCATCAAGCTTGCCCGCAGCCAGGCCCCGGTT
CATATCCGCGGTGAATCCGGTAGTGGTAAAGAAGTTGTCGCGCGACTCATCCACAATAACGGTCCGCGGGCAGCGGGCAG
CTTCGTCGCCGTTAACTGCGGCGCTATTCCCCCTGACCTCATGGAAAGCGAACTGTTTGGTCACGTCAAAGGCAGCTTCA
CCGGCGCAACCAGCGACAAACCGGGGCTGTTCCAGGCGGCAGCGGGCGGCACGCTGTTTCTCGATGAAGTGGCCGATCTA
CCCCTGGGCATGCAGGTCAAACTGCTGCGCGCCATTCAGGAAAAATCGGTGCGCCCGGTGGGCGCCAGCGAAGAGCAGCC
CACGGATGTTCGCCTGCTGAGCGCCACTCACAAGAATCTCGCTGCCGAGGTTGAGGTCGGGCGTTTCCGCAACGACCTGT
ACTATCGAATTAACGTCATTGATGTACAGGTGCCCAGTCTGCGCGAGCGACGCGAAGATCTGCCCGCACTGGCCAAGACC
ATACTCGGACGGATATCCAGCGAAGAAGGCACGGCAAAGGCGACTCTGGATGCCAGCGCTCTGGACGCTCTGGCATCGTA
CGATTTCCCCGGCAATGTTCGCGAACTCGAGAACGTGCTGGAACGCGCTTTCGCCCTCTCGGACAGCGGTACCATTACCG
GCGATGATTTACAATTCCCGAGTAACGCGCCGGTCATGCGCAGCCCGGGCACCCGCACCCGCAAAACCGATCGGCCCGGG
AGCGAAATATGGAACATCAGCGACGCAGACGGCGACCTTGAAGGTTTTCTCGAAGACATCGAGCGCAAGGTATTGTCATC
CGCGCTGGAAGAGAATCGTTGGAATAGGACAGCTGCTGCAAAACAGCTGGGAATCAGCTTCCGCTCACTGCGTTACCGAC
TGAAGAAGCTGGGCCTCGACGATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(416-457)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.652

99.783

0.605
  pilR Acinetobacter baumannii strain A118

48.517

100

0.497

Multiple sequence alignment