Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   CVO91_RS12415 Genome accession   NZ_CP024974
Coordinates   2450989..2451888 (-) Length   299 a.a.
NCBI ID   WP_002941910.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445989..2456888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS12395 (CVO91_12395) - 2447660..2447845 (-) 186 Protein_2345 lactococcin 972 family bacteriocin -
  CVO91_RS12400 (CVO91_12400) - 2447857..2449008 (-) 1152 WP_002941923.1 ABC transporter permease -
  CVO91_RS12405 (CVO91_12405) - 2449008..2449622 (-) 615 WP_002941916.1 ABC transporter ATP-binding protein -
  CVO91_RS13560 - 2449821..2449952 (-) 132 WP_002941914.1 hypothetical protein -
  CVO91_RS12410 (CVO91_12410) comR 2450064..2450975 (-) 912 WP_002941911.1 XRE family transcriptional regulator Regulator
  CVO91_RS12415 (CVO91_12415) comR 2450989..2451888 (-) 900 WP_002941910.1 XRE family transcriptional regulator Regulator
  CVO91_RS12420 (CVO91_12420) malQ 2451969..2453507 (-) 1539 WP_002941909.1 4-alpha-glucanotransferase -
  CVO91_RS12425 (CVO91_12425) - 2453810..2455069 (+) 1260 WP_002941908.1 extracellular solute-binding protein -
  CVO91_RS12430 (CVO91_12430) - 2455176..2456471 (+) 1296 WP_033875526.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35582.01 Da        Isoelectric Point: 4.5918

>NTDB_id=215866 CVO91_RS12415 WP_002941910.1 2450989..2451888(-) (comR) [Streptococcus suis strain CZ130302]
MDLGQKIERLRLEKGLSRPDFCGDESELTVRQLARIESGQSQPSIPKLEYIAQRLGIPAYSLMPDYKELPQGYLELKYKL
LREPIYNKVEVLDKKELQLEDLYNRYYEELPLDEQRVYSILQATIDTTSSRNPEFASAILDEYLPSLETKTVYTINEILL
IRLFFFQLLERKDIYQYGQKIDLFMLRLVEQFKITRQEDYFIVRDVLFSGLCCLEMIEHYDYFDTYLECLQDVMEATEDY
QKKPLVLMLIWKQLLRKTQDFSAAEPMFQSAKTFAKIIGNDHLAQKLTEEWQEDLKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=215866 CVO91_RS12415 WP_002941910.1 2450989..2451888(-) (comR) [Streptococcus suis strain CZ130302]
ATGGATTTGGGACAAAAAATCGAACGCTTACGATTAGAAAAGGGACTGAGTCGCCCAGATTTTTGTGGAGATGAATCCGA
GTTGACGGTACGCCAATTAGCTCGGATAGAAAGTGGTCAATCGCAGCCTTCTATTCCAAAGCTAGAGTACATTGCCCAGC
GTTTAGGCATTCCAGCCTATAGCCTGATGCCAGACTATAAGGAACTGCCACAAGGTTATTTGGAACTCAAGTACAAGTTG
CTGCGGGAGCCGATATATAATAAGGTGGAGGTGTTGGATAAAAAGGAGCTACAGTTAGAAGACCTTTATAATCGTTATTA
CGAAGAGCTACCTTTAGATGAACAGCGAGTGTATAGCATTCTGCAAGCAACGATAGATACGACAAGTAGTAGAAATCCAG
AATTTGCTAGTGCTATACTAGATGAGTATCTACCGAGCTTGGAAACTAAAACAGTCTATACTATTAATGAAATCTTGTTA
ATTCGTCTCTTTTTCTTTCAGTTGCTAGAAAGAAAGGACATCTATCAGTACGGACAAAAGATAGATTTATTTATGTTACG
GCTTGTTGAGCAGTTTAAAATTACTCGTCAAGAAGATTATTTTATTGTGCGTGATGTACTCTTTTCAGGTCTATGCTGCC
TTGAAATGATTGAGCACTATGATTATTTTGATACCTATCTGGAGTGTTTGCAGGATGTTATGGAAGCGACGGAGGATTAT
CAGAAAAAACCACTTGTATTGATGCTCATTTGGAAGCAACTATTGAGAAAGACACAAGATTTTTCAGCTGCTGAGCCGAT
GTTTCAATCAGCTAAAACTTTTGCCAAAATCATCGGAAACGACCATCTGGCACAGAAATTGACAGAAGAGTGGCAAGAAG
ATTTGAAAAAATATTTGTAG

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)

Helix-turn-helix (HTH_3)

(7-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

37.333

100

0.375
  comR Streptococcus mutans UA159

37

100

0.371

Multiple sequence alignment