Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BWP33_RS06645 Genome accession   NZ_CP019448
Coordinates   1360413..1361219 (-) Length   268 a.a.
NCBI ID   WP_040629223.1    Uniprot ID   -
Organism   Simonsiella muelleri ATCC 29453     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1355413..1366219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BWP33_RS06630 (BWP33_06645) - 1355905..1356972 (-) 1068 WP_002642560.1 Fic family protein -
  BWP33_RS06635 (BWP33_06650) - 1357130..1358143 (-) 1014 WP_002642559.1 ABC transporter permease subunit -
  BWP33_RS06640 (BWP33_06655) ettA 1358237..1359910 (-) 1674 WP_002642558.1 energy-dependent translational throttle protein EttA -
  BWP33_RS12405 - 1360014..1360220 (-) 207 WP_158666820.1 hypothetical protein -
  BWP33_RS06645 (BWP33_06660) comL 1360413..1361219 (-) 807 WP_040629223.1 outer membrane protein assembly factor BamD Machinery gene
  BWP33_RS06650 (BWP33_06665) rluD 1361218..1362336 (+) 1119 WP_002642556.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BWP33_RS06655 (BWP33_06670) iscA 1362489..1362809 (-) 321 WP_002642555.1 iron-sulfur cluster assembly protein IscA -
  BWP33_RS06660 (BWP33_06675) iscU 1362882..1363265 (-) 384 WP_002642554.1 Fe-S cluster assembly scaffold IscU -
  BWP33_RS06665 (BWP33_06680) - 1363326..1363520 (-) 195 WP_002642553.1 hypothetical protein -
  BWP33_RS06670 (BWP33_06685) - 1363560..1364159 (-) 600 WP_002642552.1 Fic family protein -
  BWP33_RS06675 (BWP33_06690) - 1364152..1364346 (-) 195 WP_002642551.1 hypothetical protein -
  BWP33_RS06680 (BWP33_06695) - 1364399..1365061 (-) 663 WP_002642550.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31097.40 Da        Isoelectric Point: 9.7764

>NTDB_id=215866 BWP33_RS06645 WP_040629223.1 1360413..1361219(-) (comL) [Simonsiella muelleri ATCC 29453]
MKKFLFSVVVVAALSGCAANQSKISKDAQITQNWTADQLYSEARNELNSGNYTRATKLYELLRARQPEGRYIEQSLLDTA
YAQYKNEEPEKALIALARFKQNYPASRDMDYALYLKGLVLFAEEQSFLRKLASQDWADRDPASNRKAYYAFEELVKKYPT
SKYAADATKRMAKLVDALGGHEIAIARYYAKRGAYVAANNRAQRVIENFQNTRFVEESLAIMIFTYKKMDKPRLAEDVRQ
VLQHNFPNSPYLQKGWVADDMPWWRYWK

Nucleotide


Download         Length: 807 bp        

>NTDB_id=215866 BWP33_RS06645 WP_040629223.1 1360413..1361219(-) (comL) [Simonsiella muelleri ATCC 29453]
ATGAAAAAATTTCTATTTAGTGTTGTGGTTGTGGCTGCACTTTCAGGCTGTGCCGCCAACCAAAGTAAAATCAGTAAAGA
CGCACAAATCACACAAAATTGGACTGCTGACCAACTCTATAGCGAAGCACGCAATGAATTAAATAGCGGTAATTATACGC
GAGCCACCAAATTATATGAACTTTTACGCGCAAGGCAGCCTGAAGGGCGCTACATTGAACAATCTTTGTTAGACACCGCC
TACGCCCAATACAAAAATGAAGAACCCGAAAAAGCCTTAATTGCATTGGCGCGTTTTAAACAAAATTATCCTGCCAGCCG
CGATATGGACTACGCTTTGTATTTGAAAGGCTTGGTATTATTCGCCGAAGAGCAATCGTTTTTACGCAAATTGGCATCGC
AAGATTGGGCAGACCGCGACCCTGCATCCAACCGCAAAGCCTATTACGCATTTGAAGAGCTGGTCAAAAAATACCCTACC
AGCAAATACGCAGCAGATGCCACTAAACGCATGGCAAAATTAGTGGATGCGTTGGGTGGGCATGAAATTGCCATCGCTCG
CTATTATGCCAAACGCGGTGCATACGTTGCTGCCAATAATCGCGCTCAACGCGTGATTGAGAATTTCCAAAATACGCGTT
TTGTAGAAGAATCTTTGGCAATCATGATTTTTACCTACAAAAAAATGGACAAACCTCGATTAGCAGAAGATGTGCGTCAA
GTTCTGCAACACAATTTCCCCAATAGCCCATATTTACAAAAGGGTTGGGTAGCTGATGATATGCCATGGTGGCGTTATTG
GAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

64.045

99.627

0.638
  comL Neisseria gonorrhoeae MS11

63.296

99.627

0.631

Multiple sequence alignment