Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   CVO91_RS12410 Genome accession   NZ_CP024974
Coordinates   2450064..2450975 (-) Length   303 a.a.
NCBI ID   WP_002941911.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445064..2455975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS12390 (CVO91_12390) - 2445496..2447526 (-) 2031 WP_002941925.1 DUF1430 domain-containing protein -
  CVO91_RS12395 (CVO91_12395) - 2447660..2447845 (-) 186 Protein_2345 lactococcin 972 family bacteriocin -
  CVO91_RS12400 (CVO91_12400) - 2447857..2449008 (-) 1152 WP_002941923.1 ABC transporter permease -
  CVO91_RS12405 (CVO91_12405) - 2449008..2449622 (-) 615 WP_002941916.1 ABC transporter ATP-binding protein -
  CVO91_RS13560 - 2449821..2449952 (-) 132 WP_002941914.1 hypothetical protein -
  CVO91_RS12410 (CVO91_12410) comR 2450064..2450975 (-) 912 WP_002941911.1 XRE family transcriptional regulator Regulator
  CVO91_RS12415 (CVO91_12415) comR 2450989..2451888 (-) 900 WP_002941910.1 XRE family transcriptional regulator Regulator
  CVO91_RS12420 (CVO91_12420) malQ 2451969..2453507 (-) 1539 WP_002941909.1 4-alpha-glucanotransferase -
  CVO91_RS12425 (CVO91_12425) - 2453810..2455069 (+) 1260 WP_002941908.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 35603.33 Da        Isoelectric Point: 4.8247

>NTDB_id=215865 CVO91_RS12410 WP_002941911.1 2450064..2450975(-) (comR) [Streptococcus suis strain CZ130302]
MTLGQKIEHLRLEKGLSRPDFCGDESELTVRQLARIESGQSQPSIPKLEYIAQRLGIPAYSLMPDYKELPQGYLELKYKL
LREPIYNKVEVLDKKEQYLDEIEELYCEQLPPEETVWVETSRAILDVIRTQHPEYAVALLETYLPELEEKEVFSLKDLEL
ISLYFVSVFAHIKNKKNQLSEVGKLQSFLSRLIKHVNLVQPEQLFLLSNVIFSGLACLDMLESYEFFDLYIACLQEIMEK
TQDFQKKPILLMLHWKHALVVENKYSLAEGFYQKAKLFADMIEDTHLVTMLEKQWQEDLKKYL

Nucleotide


Download         Length: 912 bp        

>NTDB_id=215865 CVO91_RS12410 WP_002941911.1 2450064..2450975(-) (comR) [Streptococcus suis strain CZ130302]
ATGACTTTAGGTCAAAAAATCGAACACTTACGATTAGAAAAGGGACTGAGCCGTCCAGATTTTTGTGGAGATGAATCCGA
GTTGACGGTACGCCAATTAGCTCGGATAGAAAGTGGTCAATCGCAACCTTCTATTCCAAAGCTAGAGTACATTGCCCAGC
GTTTAGGCATTCCAGCCTATAGCCTGATGCCAGACTATAAGGAGCTGCCACAGGGCTATCTGGAACTCAAGTATAAGTTG
CTGCGGGAGCCGATATATAATAAAGTGGAGGTATTGGATAAAAAGGAACAATACCTTGATGAAATAGAAGAACTGTATTG
TGAACAATTACCACCAGAGGAAACGGTGTGGGTTGAAACGTCAAGAGCGATTCTGGATGTTATTCGTACACAACATCCAG
AATATGCGGTAGCCTTATTAGAAACGTATTTACCTGAACTTGAGGAGAAAGAAGTCTTTTCGTTGAAGGATTTAGAACTG
ATTAGTCTGTATTTCGTCAGTGTATTTGCACATATAAAAAACAAGAAAAATCAGTTATCAGAAGTTGGTAAGTTGCAATC
GTTCTTATCGCGTTTAATAAAGCATGTCAATCTTGTTCAGCCAGAGCAATTATTTCTTCTGAGTAATGTTATTTTTTCAG
GTCTGGCTTGTTTGGATATGCTGGAGTCCTATGAATTTTTTGACCTTTATATTGCTTGTCTTCAAGAAATAATGGAGAAA
ACACAGGATTTTCAAAAGAAACCTATTTTACTTATGTTGCATTGGAAACATGCTCTTGTTGTGGAGAATAAGTATAGTTT
GGCAGAAGGGTTCTATCAAAAAGCAAAACTATTTGCTGATATGATTGAAGATACACATTTGGTAACCATGTTAGAAAAGC
AATGGCAAGAAGATTTGAAAAAATATTTGTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

40.404

98.02

0.396
  comR Streptococcus pyogenes MGAS8232

37.134

100

0.376