Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CVO91_RS09080 Genome accession   NZ_CP024974
Coordinates   1783365..1784048 (-) Length   227 a.a.
NCBI ID   WP_004194826.1    Uniprot ID   -
Organism   Streptococcus suis strain CZ130302     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778365..1789048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CVO91_RS09055 (CVO91_09055) - 1778847..1779164 (-) 318 WP_004194833.1 PadR family transcriptional regulator -
  CVO91_RS09060 (CVO91_09060) - 1779161..1779325 (-) 165 WP_033875340.1 hypothetical protein -
  CVO91_RS09065 (CVO91_09065) - 1779512..1781524 (-) 2013 WP_004194831.1 FtsX-like permease family protein -
  CVO91_RS09070 (CVO91_09070) - 1781526..1782284 (-) 759 WP_004194830.1 ABC transporter ATP-binding protein -
  CVO91_RS09075 (CVO91_09075) - 1782380..1783372 (-) 993 WP_004194828.1 sensor histidine kinase -
  CVO91_RS09080 (CVO91_09080) braR 1783365..1784048 (-) 684 WP_004194826.1 response regulator transcription factor Regulator
  CVO91_RS09085 (CVO91_09085) - 1784192..1785361 (+) 1170 WP_004194824.1 DUF2974 domain-containing protein -
  CVO91_RS09090 (CVO91_09090) - 1785376..1786500 (-) 1125 WP_004194823.1 aminotransferase -
  CVO91_RS09095 (CVO91_09095) - 1786647..1787408 (-) 762 WP_004194820.1 nuclear transport factor 2 family protein -
  CVO91_RS09100 (CVO91_09100) - 1787418..1788932 (-) 1515 WP_004194818.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26683.92 Da        Isoelectric Point: 4.6132

>NTDB_id=215834 CVO91_RS09080 WP_004194826.1 1783365..1784048(-) (braR) [Streptococcus suis strain CZ130302]
MQKILVIEDDKTISQLVAKNLINWGYQVQEVQDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEVSLDLKTMQVSYGQDVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELRLPNLIMTKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=215834 CVO91_RS09080 WP_004194826.1 1783365..1784048(-) (braR) [Streptococcus suis strain CZ130302]
ATGCAAAAGATTTTAGTTATCGAGGATGATAAAACGATTAGTCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTATCA
GGTTCAAGAGGTCCAAGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTGCTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCTATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTAGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGCGAACAAAGTTTGCTCTGGTTTGAAGAAG
TTTCCTTGGACTTGAAGACCATGCAGGTGTCCTATGGTCAGGATGTAGAAGAATTGACCCGAAATGAATTTCAGATTTTA
CGGGTGCTTTTTGAACATGGCAAGGAAGTCGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTAAACATTGCTCGCCTGCGTAAAAAGTTGGCAGAGTTGCGCTTGCCTAACTTGATTATGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

96.035

0.454
  vicR Streptococcus mutans UA159

38.696

100

0.392
  micA Streptococcus pneumoniae Cp1015

37.555

100

0.379