Detailed information NTG0215763

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: PspS49_RS25140
• Genome accession: NZ_CP019432
• Coordinates: 5698531..5699877 (+)
• Length: 448 a.a.
• NCBI ID: WP_150774967.1
• Uniprot ID: A0A5E6SU45
• Organism: Pseudomonas sp. S49
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5693531..5704877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspS49_RS25115 (PspS49_25435)	pgeF	5693737..5694459 (-)	723	WP_160041874.1	peptidoglycan editing factor PgeF	-
PspS49_RS25120 (PspS49_25440)	rluD	5694456..5695418 (-)	963	WP_016986220.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
PspS49_RS25125 (PspS49_25445)	-	5695570..5696586 (+)	1017	WP_127929826.1	outer membrane protein assembly factor BamD	-
PspS49_RS25130 (PspS49_25450)	-	5696713..5696955 (+)	243	WP_127929827.1	PP0621 family protein	-
PspS49_RS25135 (PspS49_25455)	pilS	5696945..5698534 (+)	1590	WP_160042586.1	ATP-binding protein	Regulator
PspS49_RS25140 (PspS49_25460)	pilR	5698531..5699877 (+)	1347	WP_150774967.1	sigma-54 dependent transcriptional regulator	Regulator
PspS49_RS25145 (PspS49_25465)	thiO	5699994..5701094 (-)	1101	WP_127929829.1	glycine oxidase ThiO	-
PspS49_RS25150 (PspS49_25470)	-	5701152..5701553 (-)	402	WP_160041876.1	type IV pilin protein	-
PspS49_RS25155 (PspS49_25475)	-	5701569..5704658 (-)	3090	WP_160041878.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50065.30 Da
• Isoelectric Point: 6.5960

>NTDB_id=215763 PspS49_RS25140 WP_150774967.1 5698531..5699877(+) (pilR) [Pseudomonas sp. S49]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSSTSIDRRLLGDSAPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=215763 PspS49_RS25140 WP_150774967.1 5698531..5699877(+) (pilR) [Pseudomonas sp. S49]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGAAATCACCTTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGCAATCTGGCTGAAGCCCAGGCGCTGTTGCATCGCGAAACATTCGACCTGT
GCCTGACCGACATGCGTCTGCCCGACGGCACGGGACTGGAACTGGTGCAGCACATTCAGCAGCGTTATCCACAACTGCCA
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCTTGAAAGCAGGCGCATTCGACTTTCTTACCAA
ACCAGTGGACCTCACTCGCTTGCGCGAGCTGGTCGGCACGGCACTACGCATGCCGGCGGCGGGCGGCAGCTCTACCTCGA
TTGATCGACGCTTGCTCGGCGATTCAGCACCGATGCGCAACCTGCGCAAACAGATCGACAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAATCCGGCAGCGGTAAAGAACTGGTCGCGCGACTGATCCACGAACAGGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGGGCGATTCCCTCGGAGCTGATGGAAAGCGAGTTTTTTGGTCATCGCAAAGGCA
GTTTCACCGGCGCAGTCGAGGACAAACCCGGGCTGTTTCAGGCGGCCCATGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GATTTGCCGCTGTCGATGCAGGTGAAGTTACTGCGCGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTTTGCGCCACCCACAAGGATCTCGATGCAGAGGTCGCGGCCGAGCGTTTTCGTCAGG
ACCTTTATTACCGCCTGAACGTGATTGAATTGCGCGTGCCGTCGCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCACATATGCTCAAGCGTTTGGCCAAGGACACCGGCCAACCGGCAGCACGCTTGCATCCGCAGGCGTTGGAAGCGCTGAA
GAACTACCGCTTTCCAGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGAGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTTTGAGTGAAGGCAACTGCGCGGCGGATGGTGGGATTGCCGATCTGACCCAGATCGATAAT
CTTGAGGATTATCTGGAGAACGTTGAGCGGAAGCTGATTTTGCAGGCGCTGGAGGAGACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGATCGATGCGCTACAGACTGAAGAAATTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

3D structure

• AlphaFold DB: A0A5E6SU45

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.91	98.884	0.79
pilR	Acinetobacter baumannii strain A118	48.802	100	0.5