Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PspS49_RS25135 Genome accession   NZ_CP019432
Coordinates   5696945..5698534 (+) Length   529 a.a.
NCBI ID   WP_160042586.1    Uniprot ID   A0A7Z2ME16
Organism   Pseudomonas sp. S49     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5691945..5703534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspS49_RS25115 (PspS49_25435) pgeF 5693737..5694459 (-) 723 WP_160041874.1 peptidoglycan editing factor PgeF -
  PspS49_RS25120 (PspS49_25440) rluD 5694456..5695418 (-) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PspS49_RS25125 (PspS49_25445) - 5695570..5696586 (+) 1017 WP_127929826.1 outer membrane protein assembly factor BamD -
  PspS49_RS25130 (PspS49_25450) - 5696713..5696955 (+) 243 WP_127929827.1 PP0621 family protein -
  PspS49_RS25135 (PspS49_25455) pilS 5696945..5698534 (+) 1590 WP_160042586.1 ATP-binding protein Regulator
  PspS49_RS25140 (PspS49_25460) pilR 5698531..5699877 (+) 1347 WP_150774967.1 sigma-54 dependent transcriptional regulator Regulator
  PspS49_RS25145 (PspS49_25465) thiO 5699994..5701094 (-) 1101 WP_127929829.1 glycine oxidase ThiO -
  PspS49_RS25150 (PspS49_25470) - 5701152..5701553 (-) 402 WP_160041876.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58463.92 Da        Isoelectric Point: 6.5040

>NTDB_id=215762 PspS49_RS25135 WP_160042586.1 5696945..5698534(+) (pilS) [Pseudomonas sp. S49]
MIAEATHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGVFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLSFNHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEERRVQLANHSAQTLLAQSHLQGHLID
DYSSALVDRLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQAGER
QQIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAQVWLALFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=215762 PspS49_RS25135 WP_160042586.1 5696945..5698534(+) (pilS) [Pseudomonas sp. S49]
GTGATCGCTGAGGCCACCCACGCCGACAGCAAACAGGCTCAGCGCCTGCTGCGCCTTTATCATCTTTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAACTGCTGCGCG
GCGGCAGCTGGCTGTATCTGATCCTCAACATCTTGCTGGTAGTGTTCCTTGAGAACACCCGACGGCCGGCGCAGCTGTTC
AGCCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGTGTGTTCTTTGCGGCAGGCGGTGTTGGCAGTGCGCTGGGCAATTT
GCTGATTGTCTCGGTGGCAATCAGCAACACCTTGCTACGCCGACGCATCGGCCTGTTGATCGCCGCCATCGGCGCGCTGG
GTATCGTCGGTTCGAGTTTCCTGCTGAGCTTCAACCATCCCCTGAGCGCCAATGAATACCTGCAAGCCGGCACCCTTGGC
GCCCTGTGCTTTGCCGCCTCGTTGTTGGTGCAGGGACTGATCCGGCGCCTGGAGGTCAGCGAAACACTGGCCGAACAGCG
CGCCAGTGAAGTGGTCGGGCTCGAAGCGCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATTCTGGTCCTCGACG
AGGAGCGCCGGGTGCAACTGGCGAACCACAGCGCACAAACCCTGCTCGCGCAATCTCACCTTCAGGGACATTTGATCGAC
GACTATTCCAGTGCGCTGGTCGATCGCCTGCAACTGTGGATGAACAACCCGACCTTGCGCCCGCAAAGCCTGAAAATCCC
CGGCAACGGCCTCGAACTGCAACCGAGCTTCATTGCCCTCGAGCAAAGTCCCAACCAGCAAACCCTGGTGTTTCTCGAAG
ACCTTGCGCAAATCGCCCAGCAGGCCCAGCAATTGAAACTGGCCGCGCTCGGGCGCTTGACCGCCGGGATCTCCCACGAG
ATCCGCAATCCGCTGGGTGCCATCAGTCACGCTGCACAGCTATTGGGGGAGTCCGAGGAACTCGACAGCGCCGATCGGCG
TCTGACGCAGATCATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGGCGCCAAC
AGAGCGCGCCGCAACGACTGGATCTCAAGCCGTGGCTGGAGAATTTCGTTGCCGAAAGCCGCGAACAGGCGGGCGAGCGC
CAGCAGATTCATCTGCGGATCAATTCAGGGGACTTCACCACGCTGATGGACCCCAACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAATGGCTGGCGCCACAGCGCCCTGCTGCACGATCAGGCGCAAGTCTGGCTGGCCCTGTTCAGCGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAAGACAACGGCCCCGGCGTGCCTGCCGATGAACAGACACATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2ME16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597

Multiple sequence alignment