Detailed information NTG0215755

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PspS49_RS21650
• Genome accession: NZ_CP019432
• Coordinates: 4926006..4928240 (-)
• Length: 744 a.a.
• NCBI ID: WP_160041422.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S49
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4921006..4933240

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspS49_RS21615 (PspS49_21920)	murB	4921387..4922406 (-)	1020	WP_127929341.1	UDP-N-acetylmuramate dehydrogenase	-
PspS49_RS21620 (PspS49_21925)	-	4922403..4922867 (-)	465	WP_127929342.1	low molecular weight protein-tyrosine-phosphatase	-
PspS49_RS21625 (PspS49_21930)	kdsB	4922867..4923631 (-)	765	WP_127929343.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PspS49_RS21630 (PspS49_21935)	-	4923628..4923813 (-)	186	WP_003174668.1	Trm112 family protein	-
PspS49_RS21635 (PspS49_21940)	lpxK	4923835..4924845 (-)	1011	WP_150750552.1	tetraacyldisaccharide 4'-kinase	-
PspS49_RS21640 (PspS49_21945)	-	4924845..4925273 (-)	429	WP_127929345.1	biopolymer transporter ExbD	-
PspS49_RS21645 (PspS49_21950)	exbB	4925270..4925905 (-)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PspS49_RS21650 (PspS49_21955)	comA	4926006..4928240 (-)	2235	WP_160041422.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PspS49_RS21655 (PspS49_21960)	-	4928377..4928895 (+)	519	WP_007908202.1	DUF2062 domain-containing protein	-
PspS49_RS21660 (PspS49_21965)	-	4929031..4929810 (-)	780	WP_008087860.1	ABC transporter permease	-
PspS49_RS21665 (PspS49_21970)	-	4929807..4930739 (-)	933	WP_127929347.1	ABC transporter ATP-binding protein	-
PspS49_RS21670 (PspS49_21975)	-	4930863..4931486 (-)	624	WP_127929348.1	glutathione S-transferase	-
PspS49_RS21675 (PspS49_21980)	-	4931530..4932189 (-)	660	WP_127929349.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81690.95 Da
• Isoelectric Point: 10.0481

>NTDB_id=215755 PspS49_RS21650 WP_160041422.1 4926006..4928240(-) (comA) [Pseudomonas sp. S49]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVTALMLLPFRSYPLAIFLLGFTWASVGAQWALNDRLPAELDGETRWLEG
RVVGLPQNGDGVVRFELADARSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLAVDAHGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYWL
VAGLARFGLWPLRWPWLPWACGLAFTAALGYALLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTMLLPIPCVGEGLLWLAGGLIDGLFRALAIMAGHWPAWIAPSIPAWFLAAGGLGAVLLLLPRGVPMRPLGWPLLLLLV
VPPRERLDEGLADIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLRVEKLDLMLLSHADADHAGGA
LAITRGLTVDRVISGDPPGLPEALSAEACESGRQWQWDGVAFQLWQWADARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RALLDSPLAVPTPWLQSPHHGSRSSSSMALLKVLQPAAVLISRGQGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIQVQL
GTFAPPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=215755 PspS49_RS21650 WP_160041422.1 4926006..4928240(-) (comA) [Pseudomonas sp. S49]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTGACGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCGATTTTTCTGCTGGGTTTCACCT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGCTTGCCGGCCGAACTGGATGGCGAAACCCGCTGGCTCGAAGGG
CGGGTGGTCGGGTTGCCGCAGAACGGCGACGGTGTGGTGCGTTTCGAGTTGGCTGATGCACGCTCACGTCACGAAAAACT
GCCATCGCTGATGCGCCTCGCCTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGTTTGCTCAACCCGGACGCTTTCGATTACGAGGCATGGCTGCTGGCGCAACGCATCGGTGCGACGGGC
ACGATCAAGGATGGTCAACGCCTGAGCGAAGCGCGTTGGGCCTGGCGCGACAGCATTCGTCAGCGCCTGCTTGCAGTGGA
TGCGCACGGTCGGGCCGGTGCTCTGGCCGCGTTGGTGTTGGGTGATGGGTCCGGGCTCAGTCGCGAGGATTGGCAGATCC
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGTCAGCATATCGGCTTGCTGGCGGCGGTGATGTATTGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCGCTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTTACGGC
GGCGCTGGGTTACGCCTTGCTTGCCGGATTTGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGCCTGGTACTGTTGT
GGCGTTTGCGCTTTCGCCATCTGGGGGCATGGTGGCCGCTGCTGCTGGCGTTCAATGGTGTGCTGTTGCTGGATCCGCTC
GCGAGTTTGCGTCCGGGTTTGTGGTTGTCGTTTGCGGCGGTGGCGGTGTTGATTTTCACCTTTGGCGGCCGCCTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACGCGAGCGCAATGGTTGATTGCGATCGGTTTGTGTCCGGTGTTGCTGGCACTGAACC
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTTGCAGTGCCTTGGGTCAGTCTTGTCGTGCTGCCGCCGGCGTTG
CTCGGGACGATGTTGTTGCCCATACCCTGTGTCGGCGAAGGGCTGCTGTGGCTGGCCGGTGGTTTGATCGACGGGTTGTT
TCGCGCGCTGGCGATAATGGCCGGGCATTGGCCTGCATGGATCGCACCCTCGATACCCGCCTGGTTCTTGGCTGCTGGCG
GTCTCGGCGCGGTGTTGTTGCTGTTGCCGCGCGGCGTGCCAATGCGCCCGCTGGGCTGGCCATTGCTGTTGCTGCTGGTG
GTGCCGCCACGCGAACGGCTGGATGAGGGATTGGCCGACATCTGGCAACTGGATGTCGGCCAAGGCCTGGCCATCCTGAT
CCGCACCCGCCATCACACGTTGCTCTATGACGCTGGGCCGCGCTTTGGTGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCGCGTTGCGCAAACTGAGAGTGGAAAAACTCGATCTGATGCTGCTCAGCCATGCGGATGCCGATCACGCGGGTGGCGCT
CTGGCGATCACCCGTGGTTTGACCGTCGATCGCGTGATCAGCGGTGACCCGCCGGGACTGCCTGAGGCGTTGAGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGGGTCGCTTTTCAACTCTGGCAATGGGCGGACGCCCGCGACAGCA
ATCAGCGCTCCTGCGTCTTGCAGATCGAGGCCAATGGCGAGCGTCTGTTGCTGACCGGCGATATCGACACCCACGCCGAA
CGTGCGCTGCTCGACAGTCCATTGGCCGTGCCGACACCATGGCTGCAATCGCCCCATCACGGCAGCCGCAGTTCGTCGTC
AATGGCGCTGCTCAAGGTGTTGCAACCCGCAGCCGTGCTGATTTCCCGTGGGCAGGGCAATTCCTTCGGCCATCCGCACC
CGACCGTGCTGGCGCGTTATCGCAAACAGGGACTGCGCATTTACGACAGCGCCGAGCAGGGTGCCATTCAGGTGCAACTG
GGCACCTTCGCGCCGCCTCGCACAATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCGCTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.872	96.237	0.595
comA	Ralstonia pseudosolanacearum GMI1000	33.373	100	0.378