Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   CV098_RS10260 Genome accession   NZ_CP024958
Coordinates   2124959..2125624 (+) Length   221 a.a.
NCBI ID   WP_012898528.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G423     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2119959..2130624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV098_RS12215 - 2120112..2121095 (-) 984 WP_020480964.1 hypothetical protein -
  CV098_RS10230 (CV098_10230) - 2121101..2121427 (-) 327 WP_017865098.1 lactococcin 972 family bacteriocin -
  CV098_RS10235 (CV098_10235) - 2121727..2122455 (-) 729 WP_026138960.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  CV098_RS10240 (CV098_10240) - 2122648..2122869 (+) 222 WP_010906270.1 YqgQ family protein -
  CV098_RS10245 (CV098_10245) - 2122903..2123874 (+) 972 WP_017865099.1 ROK family glucokinase -
  CV098_RS10250 (CV098_10250) - 2123877..2124263 (+) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  CV098_RS10255 (CV098_10255) - 2124346..2124792 (-) 447 WP_004254538.1 Dps family protein -
  CV098_RS10260 (CV098_10260) cclA/cilC 2124959..2125624 (+) 666 WP_012898528.1 prepilin peptidase Machinery gene
  CV098_RS10265 (CV098_10265) dinB 2125575..2126669 (-) 1095 WP_017865100.1 DNA polymerase IV -
  CV098_RS10270 (CV098_10270) - 2126748..2127239 (-) 492 WP_017865101.1 prolyl-tRNA synthetase associated domain-containing protein -
  CV098_RS10275 (CV098_10275) - 2127318..2128811 (-) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  CV098_RS10280 (CV098_10280) - 2129003..2130133 (-) 1131 WP_014570781.1 aminotransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25622.79 Da        Isoelectric Point: 8.8481

>NTDB_id=215742 CV098_RS10260 WP_012898528.1 2124959..2125624(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain G423]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQISSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPSQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMLLFGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=215742 CV098_RS10260 WP_012898528.1 2124959..2125624(+) (cclA/cilC) [Lactococcus lactis subsp. lactis strain G423]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCCTTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATAAGCTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAGTCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATCGCTTGTTCTCTTGGTAT
CATTTATTATCTAATCACAAAAAAACGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTGCTTT
TTGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

37.443

99.095

0.371
  cclA/cilC Streptococcus pneumoniae Rx1

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae D39

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae R6

37.674

97.285

0.367
  cclA/cilC Streptococcus pneumoniae TIGR4

37.209

97.285

0.362