Detailed information NTG0215722

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PspS35_RS04695
• Genome accession: NZ_CP019431
• Coordinates: 1051287..1052153 (-)
• Length: 288 a.a.
• NCBI ID: WP_159932953.1
• Uniprot ID: -
• Organism: Pseudomonas sp. S35
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1046287..1057153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspS35_RS04660 (PspS35_04750)	-	1047145..1048443 (-)	1299	WP_159932950.1	NAD(P)/FAD-dependent oxidoreductase	-
PspS35_RS04665 (PspS35_04755)	-	1048504..1048677 (-)	174	WP_044286631.1	DUF3094 family protein	-
PspS35_RS04670 (PspS35_04760)	-	1048733..1049362 (-)	630	WP_010213242.1	DUF1780 domain-containing protein	-
PspS35_RS04675 (PspS35_04765)	-	1049492..1050181 (+)	690	WP_159932951.1	energy-coupling factor ABC transporter permease	-
PspS35_RS04680 (PspS35_04770)	-	1050258..1050473 (+)	216	WP_003171680.1	hypothetical protein	-
PspS35_RS04685 (PspS35_04775)	yacG	1050470..1050670 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
PspS35_RS04690 (PspS35_04780)	coaE	1050667..1051290 (-)	624	WP_159932952.1	dephospho-CoA kinase	-
PspS35_RS04695 (PspS35_04785)	pilD	1051287..1052153 (-)	867	WP_159932953.1	A24 family peptidase	Machinery gene
PspS35_RS04700 (PspS35_04790)	pilC	1052150..1053358 (-)	1209	WP_159932954.1	type II secretion system F family protein	Machinery gene
PspS35_RS04705 (PspS35_04795)	-	1053561..1053974 (+)	414	WP_159937981.1	pilin	-
PspS35_RS04710 (PspS35_04800)	-	1054010..1055410 (+)	1401	WP_159932955.1	O-antigen ligase family protein	-
PspS35_RS04720 (PspS35_04810)	-	1055695..1056000 (+)	306	WP_159932956.1	DUF6388 family protein	-
PspS35_RS04725 (PspS35_04815)	nadC	1056074..1056922 (-)	849	WP_159932957.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32067.15 Da
• Isoelectric Point: 7.1703

>NTDB_id=215722 PspS35_RS04695 WP_159932953.1 1051287..1052153(-) (pilD) [Pseudomonas sp. S35]
MSLLLSEHPWAFVVTAWVLGMIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPVEPAGPTYNLMHPNSCCPHCDHPIRPW
ENIPLLSYLVLRGRCAHCQATISPRYPLTELACGLISALVAWHFGFGWQAGVVLVLSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNSFEWLTTLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMSSLVGVF
VGLTLMRLRKTQASAPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=215722 PspS35_RS04695 WP_159932953.1 1051287..1052153(-) (pilD) [Pseudomonas sp. S35]
TTGAGCCTGCTACTGAGCGAACACCCGTGGGCATTTGTGGTGACGGCATGGGTGCTGGGGATGATCGTTGGCAGTTTTCT
CAATGTGCTGGTGTGGCGCCTGCCCAAAATGCTCGAACGGGAATGGCGCGCCCAGGCCCATGAAGTGCTCGGCTTGCCTG
TAGAACCTGCCGGGCCGACTTACAACCTGATGCACCCTAACTCATGCTGCCCGCATTGCGACCATCCGATACGGCCCTGG
GAAAATATCCCACTGCTCAGCTACCTGGTACTCAGGGGCCGCTGTGCCCATTGCCAGGCTACGATCAGTCCTCGCTATCC
CCTCACAGAACTCGCATGCGGGCTGATCTCAGCATTGGTGGCCTGGCACTTCGGTTTTGGCTGGCAAGCCGGCGTGGTGC
TCGTGTTGAGTTGGGGGTTGCTGGCGATGAGCCTGATCGACGCAGACCACCAGTTGCTGCCCGATGTCCTGGTGCTGCCG
CTGCTGTGGCTGGGGTTGATCGTCAACAGCTTTGAGTGGCTGACGACACTACCCGACGCCCTGTGGGGCGCAGTAATCGG
ATACATGAGCCTATGGAGCGTGTTCTGGCTATTCAAGCTGGTTACCGGCAAGGACGGCATGGGCCACGGTGATTTCAAGC
TACTGGCACTGCTCGGCGCATGGGGGGGCTGGCAGATACTGCCGATGACGCTGCTGATGTCGTCCCTGGTTGGGGTCTTT
GTCGGCTTGACCCTGATGCGTCTGCGCAAGACCCAAGCATCGGCGCCAATGCCATTTGGTCCGTACCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCCGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	96.875	0.521
pilD	Vibrio campbellii strain DS40M4	50.534	97.569	0.493
pilD	Neisseria gonorrhoeae MS11	50.37	93.75	0.472
pilD	Acinetobacter baumannii D1279779	48.175	95.139	0.458
pilD	Acinetobacter nosocomialis M2	48.175	95.139	0.458