Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   PspR76_RS12625 Genome accession   NZ_CP019428
Coordinates   2725719..2727944 (+) Length   741 a.a.
NCBI ID   WP_159955652.1    Uniprot ID   -
Organism   Pseudomonas sp. R76     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2720719..2732944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR76_RS12615 (PspR76_12830) - 2722098..2724851 (-) 2754 WP_159955648.1 response regulator -
  PspR76_RS12620 (PspR76_12835) - 2725069..2725584 (-) 516 WP_159955650.1 DUF2062 domain-containing protein -
  PspR76_RS12625 (PspR76_12840) comA 2725719..2727944 (+) 2226 WP_159955652.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PspR76_RS12630 (PspR76_12845) exbB 2728054..2728689 (+) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspR76_RS12635 (PspR76_12850) - 2728686..2729114 (+) 429 WP_159955654.1 biopolymer transporter ExbD -
  PspR76_RS12640 (PspR76_12855) lpxK 2729114..2730124 (+) 1011 WP_159955656.1 tetraacyldisaccharide 4'-kinase -
  PspR76_RS12645 (PspR76_12860) - 2730147..2730332 (+) 186 WP_003174668.1 Trm112 family protein -
  PspR76_RS12650 (PspR76_12865) kdsB 2730329..2731093 (+) 765 WP_159955658.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspR76_RS12655 (PspR76_12870) - 2731093..2731557 (+) 465 WP_159955660.1 low molecular weight protein-tyrosine-phosphatase -
  PspR76_RS12660 (PspR76_12875) murB 2731554..2732573 (+) 1020 WP_159955662.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80314.16 Da        Isoelectric Point: 10.9243

>NTDB_id=215690 PspR76_RS12625 WP_159955652.1 2725719..2727944(+) (comA) [Pseudomonas sp. R76]
MRTGMFALGLGLLSLRFFPALPSIGWLLAMSVVALMLLPFRTHPMAFFLLGISWACLSAQSALDDRLTPALDGQTRWVEG
RVVGLPQQTSTGVRFELTDNRSRKAQLPKRIRVSWHGGPQVNSGERWRLAVTLKRPSGLLNFHGFDYEAWLLAQRIGATG
SVKDGQRLAPARNAWRDRLRQRLSSVDAQGREAGLAALVLGDGSGLGTEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGL
VAGLARYGCWPRALPWLPWACALAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFDAVLLLEPL
ASLQPGFWLSFAAVAVLVLAFSGRLGAWSCWQLWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLLAVPWISFVVLPLAL
LGTALLAVPLVGAGLLWLAGGALDGLFRGLALLAGQSPAWIPAEVPLGYWWVSLAGAVLLLLPKGVPFRLLGWPMLLLAV
FPPRQLVPQGQVEVTQLDVGQGQALILRTRHHTLLYDAGPRSGAFDMGARVVVPALRKLGVEALDMMLISHAHADHAGGA
AAVARALAVRRVVGGEVEGLPALLAVQPCVSGEQWEWDGVVFEFWRWPGATDSNPKSCVLRVQANGERLLLTGDIDRDAE
QAFLASALAVPTDWLQAPHHGSRSSSSGPFLERLAPKSVLISRGRGNAFGHPHPQVMQRYRALGSRVYDSAEQGAVRLQL
GAFQAPVVARSQRRFWREALL

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=215690 PspR76_RS12625 WP_159955652.1 2725719..2727944(+) (comA) [Pseudomonas sp. R76]
ATGAGAACTGGGATGTTTGCCCTCGGACTTGGCCTACTGTCGCTGCGATTTTTCCCAGCGCTGCCTTCTATCGGTTGGCT
GCTGGCAATGTCGGTTGTCGCACTGATGCTGTTGCCTTTTCGTACCCACCCGATGGCGTTTTTCCTGCTGGGGATCAGTT
GGGCCTGCCTCAGCGCACAGTCGGCCCTGGATGATCGCCTTACGCCTGCACTGGATGGCCAGACGCGTTGGGTAGAGGGG
CGGGTAGTCGGGCTGCCGCAACAGACAAGCACCGGTGTACGTTTCGAGTTGACCGACAACCGCTCGCGCAAGGCCCAATT
GCCGAAGCGCATCCGCGTGTCCTGGCATGGTGGCCCGCAGGTGAACAGTGGCGAGCGTTGGCGCCTGGCGGTCACGTTAA
AGCGCCCGTCCGGGTTGCTCAATTTTCATGGCTTTGACTATGAAGCCTGGCTACTGGCCCAGCGCATTGGCGCAACCGGC
TCGGTGAAAGATGGCCAACGCCTGGCCCCGGCCCGCAACGCCTGGCGCGACCGCCTCCGGCAGCGCCTGAGCAGCGTCGA
CGCCCAGGGCCGCGAGGCGGGTTTGGCAGCGCTGGTGCTGGGCGACGGCTCGGGGCTGGGCACTGAGGACTGGCGGGTGT
TGCAAGACACCGGCACGGTGCACCTGCTGGTGATCTCGGGCCAGCACATCGGTTTGCTGGCGGGGCTGATCTACGGCTTG
GTGGCCGGGCTGGCGCGCTACGGCTGCTGGCCCCGCGCCTTGCCGTGGCTGCCATGGGCGTGCGCCCTGGCGTTTGCCGC
CGCGCTGGGCTATGGCTTATTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCGTGTGTGATGGTCGGGCTGGTTCTGCTCT
GGCGTTTGCGCTTTCGACATTTGGGCGTGTGGTGGCCGTTGTTGCTGGCATTCGATGCTGTATTGCTGCTGGAGCCATTG
GCCAGCTTGCAACCGGGTTTCTGGTTGTCGTTCGCCGCCGTCGCGGTGCTGGTGCTCGCGTTCAGCGGGCGCTTGGGCGC
CTGGAGCTGCTGGCAGTTGTGGACGCGTCCCCAATGGCTGATTGCGATTGGCTTGTTTCCGGTATTGCTGGTGCTGGGGT
TGCCCATCAGCCTGAGTGCGCCGCTGGCGAATTTATTGGCGGTGCCGTGGATCAGCTTCGTGGTGTTGCCGCTGGCATTG
CTGGGCACTGCGTTGCTGGCGGTGCCGTTGGTCGGGGCGGGCCTGTTGTGGTTGGCCGGCGGCGCGCTGGACGGGTTGTT
CAGGGGTTTGGCACTGTTGGCAGGGCAAAGCCCGGCCTGGATACCGGCCGAGGTGCCGCTGGGTTATTGGTGGGTGAGCC
TGGCCGGTGCGGTGTTATTGCTGTTGCCCAAAGGCGTGCCGTTCCGGCTGCTGGGTTGGCCGATGCTGTTGCTGGCGGTT
TTTCCACCCAGGCAACTGGTGCCGCAAGGGCAGGTGGAGGTGACCCAGTTGGACGTCGGCCAGGGGCAAGCGTTGATCCT
GCGCACCCGCCATCACACCTTGCTGTACGACGCCGGGCCGCGCTCGGGGGCATTTGACATGGGCGCGCGCGTGGTGGTGC
CAGCCTTGAGGAAGCTCGGGGTAGAGGCGTTGGACATGATGCTGATCAGCCACGCTCACGCCGATCATGCGGGCGGTGCG
GCGGCGGTCGCCCGCGCGCTGGCGGTGAGGCGGGTCGTGGGTGGCGAGGTCGAAGGGTTGCCAGCATTGCTTGCGGTTCA
GCCGTGTGTCAGTGGTGAGCAATGGGAGTGGGATGGCGTGGTGTTCGAGTTTTGGAGGTGGCCAGGCGCCACTGACAGCA
ACCCGAAATCCTGTGTGTTACGGGTCCAGGCCAATGGCGAACGCCTGCTGCTGACCGGCGACATTGATCGCGATGCCGAA
CAGGCCTTTCTCGCTTCAGCCTTGGCCGTACCGACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGCTCTTCATC
CGGGCCCTTTCTAGAGCGGCTTGCGCCCAAGTCGGTGCTGATTTCACGTGGCCGTGGCAACGCATTCGGGCATCCGCATC
CACAGGTGATGCAGCGTTATCGGGCTTTGGGCAGCCGTGTCTACGACAGCGCCGAGCAGGGCGCCGTACGTCTGCAATTG
GGCGCCTTTCAAGCCCCGGTTGTTGCGCGCAGTCAACGCCGCTTCTGGCGCGAAGCGCTACTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.057

97.031

0.592
  comA Ralstonia pseudosolanacearum GMI1000

35.48

100

0.379

Multiple sequence alignment