Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PspR76_RS12630 Genome accession   NZ_CP019428
Coordinates   2728054..2728689 (+) Length   211 a.a.
NCBI ID   WP_106579832.1    Uniprot ID   A0A7M1KNP4
Organism   Pseudomonas sp. R76     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2723054..2733689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PspR76_RS12620 (PspR76_12835) - 2725069..2725584 (-) 516 WP_159955650.1 DUF2062 domain-containing protein -
  PspR76_RS12625 (PspR76_12840) comA 2725719..2727944 (+) 2226 WP_159955652.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PspR76_RS12630 (PspR76_12845) exbB 2728054..2728689 (+) 636 WP_106579832.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PspR76_RS12635 (PspR76_12850) - 2728686..2729114 (+) 429 WP_159955654.1 biopolymer transporter ExbD -
  PspR76_RS12640 (PspR76_12855) lpxK 2729114..2730124 (+) 1011 WP_159955656.1 tetraacyldisaccharide 4'-kinase -
  PspR76_RS12645 (PspR76_12860) - 2730147..2730332 (+) 186 WP_003174668.1 Trm112 family protein -
  PspR76_RS12650 (PspR76_12865) kdsB 2730329..2731093 (+) 765 WP_159955658.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PspR76_RS12655 (PspR76_12870) - 2731093..2731557 (+) 465 WP_159955660.1 low molecular weight protein-tyrosine-phosphatase -
  PspR76_RS12660 (PspR76_12875) murB 2731554..2732573 (+) 1020 WP_159955662.1 UDP-N-acetylmuramate dehydrogenase -
  PspR76_RS12665 (PspR76_12880) - 2732636..2733307 (-) 672 WP_159955664.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23021.17 Da        Isoelectric Point: 6.8768

>NTDB_id=215691 PspR76_RS12630 WP_106579832.1 2728054..2728689(+) (exbB) [Pseudomonas sp. R76]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRITPEHLLGQVWGWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHEMERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDFVEGRV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=215691 PspR76_RS12630 WP_106579832.1 2728054..2728689(+) (exbB) [Pseudomonas sp. R76]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAGCGCCTCTGGACCCTGCGCGCCAGCCGCATCACCCCCGAGCATCTATTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AGCAACTGGACAAAGACAAGCTCAAGGAACTGCGCGCCAACTCGCCCTTGGGTGAAATCCTCGCCGCCGGCCTCGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCCCGGGTCATCCATGAAATGGAGCGCTACAT
CAATGCGCTTGGCACCATCGCCGCCATGGCGCCATTGCTGGGGCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGTTCGGGCATGACCACGAACGCGGCGGTGCTGGCCGGCGGTATCTCCAAGGCCTTGATCACCACGGCT
GCGGGCCTGATGGTCGGGATTCCCTCGGTGTTTTTCCACCGTTTCCTGCAGCGCCGCATCGACGAGCTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGATGTCGATTTTGTCGAGGGCCGAGTGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KNP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.526

0.834

Multiple sequence alignment