Detailed information NTG0215684

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PspR76_RS04765
• Genome accession: NZ_CP019428
• Coordinates: 1077199..1078065 (-)
• Length: 288 a.a.
• NCBI ID: WP_159954187.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R76
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1072199..1083065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspR76_RS04725 (PspR76_04835)	-	1072598..1073896 (-)	1299	WP_159954181.1	NAD(P)/FAD-dependent oxidoreductase	-
PspR76_RS04730 (PspR76_04840)	-	1073957..1074130 (-)	174	WP_064450648.1	DUF3094 family protein	-
PspR76_RS04735 (PspR76_04845)	-	1074220..1074849 (-)	630	WP_159954182.1	DUF1780 domain-containing protein	-
PspR76_RS04740 (PspR76_04850)	-	1074950..1075417 (+)	468	WP_159954183.1	FAD/FMN-containing dehydrogenase	-
PspR76_RS04745 (PspR76_04855)	-	1075414..1076103 (+)	690	WP_159954184.1	energy-coupling factor ABC transporter permease	-
PspR76_RS04750 (PspR76_04860)	-	1076170..1076385 (+)	216	WP_003171680.1	hypothetical protein	-
PspR76_RS04755 (PspR76_04865)	yacG	1076382..1076582 (-)	201	WP_159954185.1	DNA gyrase inhibitor YacG	-
PspR76_RS04760 (PspR76_04870)	coaE	1076579..1077202 (-)	624	WP_159954186.1	dephospho-CoA kinase	-
PspR76_RS04765 (PspR76_04875)	pilD	1077199..1078065 (-)	867	WP_159954187.1	A24 family peptidase	Machinery gene
PspR76_RS04770 (PspR76_04880)	pilC	1078062..1079270 (-)	1209	WP_159954188.1	type II secretion system F family protein	Machinery gene
PspR76_RS04775 (PspR76_04885)	-	1079474..1079887 (+)	414	WP_159961324.1	pilin	-
PspR76_RS04785 (PspR76_04895)	-	1080192..1080497 (+)	306	WP_159954189.1	DUF6388 family protein	-
PspR76_RS04790 (PspR76_04900)	nadC	1080758..1081606 (-)	849	WP_159954190.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31759.92 Da
• Isoelectric Point: 7.2576

>NTDB_id=215684 PspR76_RS04765 WP_159954187.1 1077199..1078065(-) (pilD) [Pseudomonas sp. R76]
MNLLLQEEPWVFVAIALLLGLIVGSFLNVLVWRLPKMLEREWRGQAQEVLGLPADPAGARYNLMHPGSCCPQCNHPIRAW
ENIPLLSYLLLKGRCAHCREPISARYPFTELACALISATVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLILNSADVLTSLPDALWGAVIGYLSLWTVFWLFKVVTGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLLGVA
AGMVLLRLRKPQASIPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=215684 PspR76_RS04765 WP_159954187.1 1077199..1078065(-) (pilD) [Pseudomonas sp. R76]
TTGAACCTGTTGCTTCAGGAAGAGCCTTGGGTCTTTGTCGCGATAGCGCTGCTGCTTGGGCTGATCGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGCCTGCCGAAGATGCTCGAGCGCGAGTGGCGCGGCCAGGCCCAGGAAGTGCTCGGCTTGCCTG
CCGACCCTGCGGGCGCCAGGTATAACTTGATGCATCCCGGTTCGTGCTGCCCGCAGTGCAACCATCCGATTCGCGCCTGG
GAAAATATTCCGCTGCTCAGCTACCTGCTGCTCAAGGGCCGTTGCGCCCATTGTCGTGAACCCATCAGTGCCCGCTACCC
TTTCACCGAGTTGGCCTGCGCGCTGATCTCGGCGACAGTTGCCTGGCATTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGTTGCTGAGTTGGGGCTTGCTGGCGATGAGCCTGATCGACGTGGACCATCAATTGCTGCCCGACGTTCTGGTGCTGCCG
CTGTTATGGCTGGGGTTGATCCTCAACAGCGCTGACGTGCTGACATCGCTGCCCGATGCGCTCTGGGGCGCGGTCATTGG
TTATTTGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGGTGGTTACCGGCAAGGACGGCATGGGCTATGGCGACTTCAAGT
TATTGGCCTTGCTCGGCGCCTGGGGTGGCTGGCAGATTTTGCCGATGACACTGCTGATGTCGTCGCTGCTGGGAGTAGCT
GCCGGGATGGTTCTGTTGCGCTTGCGCAAGCCCCAGGCATCGATTCCGATGCCGTTTGGTCCATGCCTGGCGATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.597	96.528	0.517
pilD	Vibrio campbellii strain DS40M4	50.352	98.611	0.497
pilD	Acinetobacter baumannii D1279779	49.11	97.569	0.479
pilD	Acinetobacter nosocomialis M2	48.754	97.569	0.476
pilD	Neisseria gonorrhoeae MS11	48.45	89.583	0.434