Detailed information NTG0215648

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PspR84_RS24675
• Genome accession: NZ_CP019426
• Coordinates: 5590095..5590967 (+)
• Length: 290 a.a.
• NCBI ID: WP_160059460.1
• Uniprot ID: -
• Organism: Pseudomonas sp. R84
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5585095..5595967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PspR84_RS24650 (PspR84_24900)	-	5585303..5585599 (+)	297	WP_160059456.1	DUF2845 domain-containing protein	-
PspR84_RS24655 (PspR84_24905)	-	5585871..5586227 (-)	357	WP_047600285.1	BON domain-containing protein	-
PspR84_RS24660 (PspR84_24910)	-	5586525..5586947 (-)	423	WP_160059457.1	pilin	-
PspR84_RS24665 (PspR84_24915)	pilB	5587173..5588873 (+)	1701	WP_160059458.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PspR84_RS24670 (PspR84_24920)	pilC	5588876..5590093 (+)	1218	WP_160059459.1	type II secretion system F family protein	Machinery gene
PspR84_RS24675 (PspR84_24925)	pilD	5590095..5590967 (+)	873	WP_160059460.1	A24 family peptidase	Machinery gene
PspR84_RS24680 (PspR84_24930)	coaE	5590964..5591587 (+)	624	WP_160059461.1	dephospho-CoA kinase	-
PspR84_RS24685 (PspR84_24935)	yacG	5591584..5591784 (+)	201	WP_160059462.1	DNA gyrase inhibitor YacG	-
PspR84_RS24690 (PspR84_24940)	-	5591790..5592005 (-)	216	WP_038369048.1	hypothetical protein	-
PspR84_RS24695 (PspR84_24945)	-	5592071..5592760 (-)	690	WP_160059463.1	energy-coupling factor ABC transporter permease	-
PspR84_RS24700 (PspR84_24950)	-	5592933..5593559 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
PspR84_RS24705 (PspR84_24955)	-	5593556..5594083 (+)	528	WP_160059464.1	MOSC domain-containing protein	-
PspR84_RS24710 (PspR84_24960)	-	5594135..5594308 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
PspR84_RS24715 (PspR84_24965)	-	5594372..5595670 (+)	1299	WP_016986237.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32426.75 Da
• Isoelectric Point: 7.4001

>NTDB_id=215648 PspR84_RS24675 WP_160059460.1 5590095..5590967(+) (pilD) [Pseudomonas sp. R84]
MPIEELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
PWENIPLLSYLWLRGRCSACTAPISKRYPLTELACGLLSAFIAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVPLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLRNEKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=215648 PspR84_RS24675 WP_160059460.1 5590095..5590967(+) (pilD) [Pseudomonas sp. R84]
ATGCCTATCGAAGAACTGTTCGCCCTGTATCCGCTGGCCTTTGTCTTCACCGCCCTGCTGCTGGGTCTGGTGGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCACGATGTGCTCGGTT
TGCCTGGTGAAACGCCGCTGCCCACTTACAACCTGATGCTGCCGCACTCCGAATGTCCGCATTGCGCCCACCGGATTCGC
CCGTGGGAAAACATTCCCCTGTTGAGTTACCTGTGGCTGCGCGGGCGCTGCTCTGCGTGTACCGCACCGATCAGCAAACG
TTATCCACTAACCGAACTGGCCTGTGGGTTGCTCTCGGCCTTCATCGCCTGGCACTTCGGTTTCGGTTGGCCGGCGTGCC
TGTTGATCGTCCTCACCTGGGGTTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAACTGTTGCCCGATGTGCTGGTA
CTGCCGTTGCTGTGGCTAGGGCTGATCGTCAACAGCTTCGGCTTGTTCGTGCCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCAGTATTCTGGCTGTTCAAACTGCTGACCGGCAAGGACGGCATCGGCCACGGTGATT
TCAAGCTGCTGGCGTTGCTTGGAGCGTGGGGCGGCTGGCAGATTTTGCCGCTGACGATCCTGTTGTCATCGCTGGTCGGC
GCCATTATCGGGGTGATTTTGCTGCGCTTGCGTAATGAGAAAACCTCGACCCCCATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.674	97.241	0.541
pilD	Vibrio campbellii strain DS40M4	52.837	97.241	0.514
pilD	Acinetobacter baumannii D1279779	49.296	97.931	0.483
pilD	Acinetobacter nosocomialis M2	49.296	97.931	0.483
pilD	Neisseria gonorrhoeae MS11	48.148	93.103	0.448