Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   CV726_RS07800 Genome accession   NZ_CP024950
Coordinates   1596136..1598112 (-) Length   658 a.a.
NCBI ID   WP_145940720.1    Uniprot ID   -
Organism   Helicobacter pylori strain B130A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591136..1603112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV726_RS07775 (CV726_07765) - 1591214..1591606 (+) 393 WP_000656174.1 4Fe-4S dicluster domain-containing protein -
  CV726_RS07780 (CV726_07770) - 1591616..1592839 (+) 1224 WP_000124348.1 2-oxoacid:ferredoxin oxidoreductase subunit alpha -
  CV726_RS07785 (CV726_07775) - 1592852..1593796 (+) 945 WP_000238160.1 thiamine pyrophosphate-dependent enzyme -
  CV726_RS07790 (CV726_07780) purB 1593905..1595227 (+) 1323 WP_145940718.1 adenylosuccinate lyase -
  CV726_RS07795 (CV726_07785) - 1595292..1596125 (+) 834 WP_145940719.1 outer membrane protein -
  CV726_RS07800 (CV726_07790) uvrB 1596136..1598112 (-) 1977 WP_145940720.1 excinuclease ABC subunit UvrB Machinery gene
  CV726_RS07805 (CV726_07795) - 1598152..1598897 (-) 746 Protein_1488 hypothetical protein -
  CV726_RS07810 (CV726_07800) - 1598914..1601409 (-) 2496 WP_227978414.1 DUF3519 domain-containing protein -
  CV726_RS08355 - 1601747..1601947 (+) 201 Protein_1490 hypothetical protein -
  CV726_RS07820 (CV726_07810) - 1602185..1602955 (-) 771 WP_000540106.1 HP1117 family Sel1-like repeat protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 75954.41 Da        Isoelectric Point: 6.7308

>NTDB_id=215451 CV726_RS07800 WP_145940720.1 1596136..1598112(-) (uvrB) [Helicobacter pylori strain B130A]
MPLFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCTQLYSEFKAFF
PHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKI
KVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNET
PFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNK
LELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRIKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKIT
QSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKIPKSEREKIIKELDKKMRECAKNL
DFEEAMRLRDEIAQLRTL

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=215451 CV726_RS07800 WP_145940720.1 1596136..1598112(-) (uvrB) [Helicobacter pylori strain B130A]
ATGCCTTTATTTGATTTAAAAAGCCCTTACCCACCAGCAGGCGATCAGCCCCAAGCCATAGAAGCTTTAGCAAAAAGCTT
GAAAAATAACAACCATTACCAAACTCTAGTGGGGGTTACAGGAAGCGGTAAGACTTATACGATGGCCAATATCATCGCTC
AAACCAATAAACCCGCTTTGATCATGAGCCATAATAAGACCTTATGCACGCAGCTTTATAGCGAGTTTAAGGCGTTTTTC
CCGCATAATAGGGTGGAGTATTTTATCTCCCACTTTGATTACTACCAGCCTGAAAGCTATATCCCTAGGAGGGATTTATT
CATTGAAAAAGACAGCTCTATTAATGATGATTTAGAGCGTTTGAGATTGAGCGCGACCACCTCACTTTTAGGTTATGATG
ATGTGATTGTGATAGCGAGCGTTTCGGCTAATTATGGTTTGGGTAACCCTGAAGAATATTTGAAAGTCATGGAAAAAATC
AAAGTGGGCGAGAAGCGCGCTTATAAGAGCTTTTTACTCAAGCTGGTAGAAATGGGTTATAGCCGTAATGAAGTGGTGTT
TGATAGGGGGAGCTTTAGAGCGACTGGGGAATGCGTGGATATTTTCCCCGCTTATAATGACGCTGAATTTATTAGGATTG
AATTTTTTGGCGATGAGATAGAAAGGATTGCGGTCTTTGACGCTTTAGAAAGAAATGAAATCAAGCGCTTGGATTCTGTC
ATGCTTTATGCAGCCAGTCAGTTTGCTGTAGGGAGCGAGAGGTTGAATTTAGCCATTAAAAGCATTGAAGATGAACTCGC
TTTAAGGTTGAAATTTTTTAAAGAGCAGGATAAAATGCTTGAATACAACCGCCTCAAACAACGCACTGAGCATGATTTAG
AAATGATTAGCGCGACCGGTGTGTGTAAGGGCATTGAAAATTACGCACGCCATTTTACAGGCAAAGCCCCTAATGAAACG
CCTTTTTGCTTGTTTGATTATTTAGGGATATTTGAGCGGGAGTTTTTAGTCATTGTAGATGAAAGCCATGTGAGTTTGCC
GCAGTTTGGAGGGATGTATGCAGGGGATATGAGCAGGAAAAGCGTTTTAGTGGAATACGGTTTTAGATTGCCTAGTGCTT
TAGACAACCGCCCTTTAAAATTTGATGAATTTATCCATAAAAATTGCCAGTTCCTTTTTGTGTCCGCTACGCCCAATAAG
CTCGAATTAGAGCTTTCCAAAAAGAATGTCGCTGAGCAAATCATTCGCCCTACAGGGCTTTTAGACCCCAAATTTGAAGT
GCGAGACAGCGATAAGCAAGTCCAGGATTTATTTGATGAAATCAAGTTAGTGGTGGCTAGAGATGAAAGGGTGCTCATCA
CCACGCTCACTAAAAAAATGGCAGAAGAATTGTGCAAATATTATGCTGAATGGGGCTTGAAAGCGCGTTACATGCATAGT
GAAATTGATGCGATTGAAAGAAATCACATCATCCGCTCTTTAAGGATTAAAGAATTTGACATTTTAATAGGGATCAATCT
TTTAAGAGAGGGGTTGGATTTGCCTGAAGTCTCTTTAGTAGCGATCATGGATGCGGATAAAGAAGGGTTTTTAAGGAGCG
AAACAAGCCTTATTCAAACCATGGGGCGAGCCGCTAGAAACGCTAATGGTAAGGTTTTATTATACGCTAAAAAGATCACT
CAAAGCATGCAAAAAGCCTTTGAGATTACGAGTTACAGGCGCGCTAAGCAAGAAGAGTTTAATAAAATTCATAATATCAC
CCCCAAAACCGTTACTCGCGCTTTAGAAGAGGAATTGAAATTAAGAGACGATGAGATTAGAATCGCTAAAGCCTTAAAAA
AGGACAAAATCCCTAAAAGCGAAAGGGAAAAAATCATTAAAGAACTGGATAAAAAAATGCGAGAATGCGCGAAAAATTTG
GATTTTGAAGAAGCGATGCGTTTGAGAGACGAAATCGCTCAATTAAGAACGCTTTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(159-248)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB/uvrC motif (UVR)

(623-657)

Helicase conserved C-terminal domain (Helicase_C)

(445-547)

Type III restriction enzyme, res subunit (ResIII)

(15-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

49.321

100

0.497
  uvrB Streptococcus pneumoniae D39

49.321

100

0.497
  uvrB Streptococcus pneumoniae TIGR4

49.321

100

0.497